Hb_016777_040

Information

Type -
Description -
Location Contig16777: 27205-40484
Sequence    

Annotation

kegg
ID pxb:103945194
description DNA polymerase eta-like
nr
ID XP_012065123.1
description PREDICTED: DNA polymerase eta-like [Jatropha curcas]
swissprot
ID Q8H2D5
description DNA polymerase eta OS=Arabidopsis thaliana GN=POLH PE=1 SV=1
trembl
ID A0A067LPJ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11166 PE=4 SV=1
Gene Ontology
ID GO:0003684
description dna polymerase eta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15580: 27561-40442 , PASA_asmbl_15581: 34080-40442 , PASA_asmbl_15582: 33652-33910 , PASA_asmbl_15583: 27576-28055
cDNA
(Sanger)
(ID:Location)		 053_L24.ab1: 27561-29428

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016777_040 0.0 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]
2 Hb_002889_010 0.0471222948 - - ubx domain-containing, putative [Ricinus communis]
3 Hb_002471_240 0.0579544146 - - PREDICTED: protein POLLEN DEFECTIVE IN GUIDANCE 1 isoform X1 [Jatropha curcas]
4 Hb_001377_310 0.0584572949 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
5 Hb_000373_080 0.0634806757 - - PREDICTED: serine decarboxylase [Jatropha curcas]
6 Hb_001089_070 0.0667899347 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
7 Hb_002805_190 0.067961314 - - spliceosome associated protein, putative [Ricinus communis]
8 Hb_000803_270 0.0692734948 - - PREDICTED: nuclear cap-binding protein subunit 1 [Jatropha curcas]
9 Hb_003861_050 0.0714776035 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
10 Hb_021943_080 0.0720389496 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
11 Hb_005289_040 0.0722489598 - - poly(A) polymerase, putative [Ricinus communis]
12 Hb_133702_030 0.0734380222 - - PREDICTED: uric acid degradation bifunctional protein TTL isoform X1 [Jatropha curcas]
13 Hb_000120_280 0.0734896473 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
14 Hb_004586_060 0.0744402812 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
15 Hb_000398_080 0.0745065643 - - tip120, putative [Ricinus communis]
16 Hb_000737_030 0.0751208707 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
17 Hb_000603_030 0.0764160124 - - Ribonuclease III, putative [Ricinus communis]
18 Hb_003186_020 0.0766792284 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
19 Hb_000082_010 0.076698608 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
20 Hb_128548_010 0.0770270137 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_016777_040 Hb_016777_040 Hb_002889_010 Hb_002889_010 Hb_016777_040--Hb_002889_010 Hb_002471_240 Hb_002471_240 Hb_016777_040--Hb_002471_240 Hb_001377_310 Hb_001377_310 Hb_016777_040--Hb_001377_310 Hb_000373_080 Hb_000373_080 Hb_016777_040--Hb_000373_080 Hb_001089_070 Hb_001089_070 Hb_016777_040--Hb_001089_070 Hb_002805_190 Hb_002805_190 Hb_016777_040--Hb_002805_190 Hb_003861_050 Hb_003861_050 Hb_002889_010--Hb_003861_050 Hb_002889_010--Hb_002471_240 Hb_002889_010--Hb_001377_310 Hb_000816_250 Hb_000816_250 Hb_002889_010--Hb_000816_250 Hb_000134_270 Hb_000134_270 Hb_002889_010--Hb_000134_270 Hb_003177_020 Hb_003177_020 Hb_002471_240--Hb_003177_020 Hb_028960_020 Hb_028960_020 Hb_002471_240--Hb_028960_020 Hb_003883_060 Hb_003883_060 Hb_002471_240--Hb_003883_060 Hb_002471_240--Hb_001377_310 Hb_000035_110 Hb_000035_110 Hb_001377_310--Hb_000035_110 Hb_000170_090 Hb_000170_090 Hb_001377_310--Hb_000170_090 Hb_005460_050 Hb_005460_050 Hb_001377_310--Hb_005460_050 Hb_001377_310--Hb_000373_080 Hb_001377_310--Hb_003861_050 Hb_004586_060 Hb_004586_060 Hb_001377_310--Hb_004586_060 Hb_003186_020 Hb_003186_020 Hb_000373_080--Hb_003186_020 Hb_000317_510 Hb_000317_510 Hb_000373_080--Hb_000317_510 Hb_001005_030 Hb_001005_030 Hb_000373_080--Hb_001005_030 Hb_000214_050 Hb_000214_050 Hb_000373_080--Hb_000214_050 Hb_000362_170 Hb_000362_170 Hb_000373_080--Hb_000362_170 Hb_005289_040 Hb_005289_040 Hb_001089_070--Hb_005289_040 Hb_000603_030 Hb_000603_030 Hb_001089_070--Hb_000603_030 Hb_001089_070--Hb_001005_030 Hb_021943_080 Hb_021943_080 Hb_001089_070--Hb_021943_080 Hb_005588_090 Hb_005588_090 Hb_001089_070--Hb_005588_090 Hb_000398_080 Hb_000398_080 Hb_002805_190--Hb_000398_080 Hb_002805_190--Hb_003861_050 Hb_002805_190--Hb_005289_040 Hb_003638_090 Hb_003638_090 Hb_002805_190--Hb_003638_090 Hb_008568_020 Hb_008568_020 Hb_002805_190--Hb_008568_020 Hb_002805_190--Hb_001377_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.31256 7.69837 12.5198 8.9618 8.19874 8.42006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.08623 4.51248 4.35908 10.1233 7.52952

CAGE analysis