Hb_002471_240

Information

Type -
Description -
Location Contig2471: 242420-247779
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa003049mg
description hypothetical protein
nr
ID XP_012072353.1
description PREDICTED: protein POLLEN DEFECTIVE IN GUIDANCE 1 isoform X1 [Jatropha curcas]
swissprot
ID Q4VBD2
description Transmembrane anterior posterior transformation protein 1 OS=Mus musculus GN=Tapt1 PE=2 SV=2
trembl
ID A0A067L241
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04797 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25674: 243018-244593 , PASA_asmbl_25675: 246624-246750
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002471_240 0.0 - - PREDICTED: protein POLLEN DEFECTIVE IN GUIDANCE 1 isoform X1 [Jatropha curcas]
2 Hb_002889_010 0.0540659029 - - ubx domain-containing, putative [Ricinus communis]
3 Hb_016777_040 0.0579544146 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]
4 Hb_003177_020 0.0653216855 - - diphthine synthase, putative [Ricinus communis]
5 Hb_028960_020 0.0666742163 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
6 Hb_003883_060 0.0741686136 transcription factor TF Family: BSD PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Jatropha curcas]
7 Hb_001377_310 0.0757441419 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
8 Hb_000082_010 0.0768282843 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
9 Hb_012733_070 0.077067482 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
10 Hb_000170_090 0.0774485151 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
11 Hb_000836_460 0.0792743645 - - PREDICTED: uncharacterized protein LOC105628435 [Jatropha curcas]
12 Hb_000163_090 0.0838639926 - - gamma-tubulin complex component, putative [Ricinus communis]
13 Hb_003430_050 0.0842727822 - - PREDICTED: serine/arginine-rich splicing factor RSZ21A isoform X1 [Phoenix dactylifera]
14 Hb_003363_080 0.0845428676 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
15 Hb_008114_040 0.0854521589 - - Fanconi anemia group D2 [Gossypium arboreum]
16 Hb_004319_080 0.0854723198 - - PREDICTED: GPI ethanolamine phosphate transferase 1 [Jatropha curcas]
17 Hb_003159_140 0.0856070702 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002681_090 0.0856290834 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
19 Hb_000441_220 0.0860311818 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000373_080 0.0862466231 - - PREDICTED: serine decarboxylase [Jatropha curcas]

Gene co-expression network

sample Hb_002471_240 Hb_002471_240 Hb_002889_010 Hb_002889_010 Hb_002471_240--Hb_002889_010 Hb_016777_040 Hb_016777_040 Hb_002471_240--Hb_016777_040 Hb_003177_020 Hb_003177_020 Hb_002471_240--Hb_003177_020 Hb_028960_020 Hb_028960_020 Hb_002471_240--Hb_028960_020 Hb_003883_060 Hb_003883_060 Hb_002471_240--Hb_003883_060 Hb_001377_310 Hb_001377_310 Hb_002471_240--Hb_001377_310 Hb_002889_010--Hb_016777_040 Hb_003861_050 Hb_003861_050 Hb_002889_010--Hb_003861_050 Hb_002889_010--Hb_001377_310 Hb_000816_250 Hb_000816_250 Hb_002889_010--Hb_000816_250 Hb_000134_270 Hb_000134_270 Hb_002889_010--Hb_000134_270 Hb_016777_040--Hb_001377_310 Hb_000373_080 Hb_000373_080 Hb_016777_040--Hb_000373_080 Hb_001089_070 Hb_001089_070 Hb_016777_040--Hb_001089_070 Hb_002805_190 Hb_002805_190 Hb_016777_040--Hb_002805_190 Hb_003363_080 Hb_003363_080 Hb_003177_020--Hb_003363_080 Hb_002445_060 Hb_002445_060 Hb_003177_020--Hb_002445_060 Hb_003177_020--Hb_002889_010 Hb_002445_100 Hb_002445_100 Hb_003177_020--Hb_002445_100 Hb_003177_020--Hb_001377_310 Hb_007426_110 Hb_007426_110 Hb_028960_020--Hb_007426_110 Hb_006483_110 Hb_006483_110 Hb_028960_020--Hb_006483_110 Hb_001348_080 Hb_001348_080 Hb_028960_020--Hb_001348_080 Hb_002205_030 Hb_002205_030 Hb_028960_020--Hb_002205_030 Hb_000797_040 Hb_000797_040 Hb_028960_020--Hb_000797_040 Hb_004846_220 Hb_004846_220 Hb_028960_020--Hb_004846_220 Hb_001301_150 Hb_001301_150 Hb_003883_060--Hb_001301_150 Hb_013726_090 Hb_013726_090 Hb_003883_060--Hb_013726_090 Hb_004705_170 Hb_004705_170 Hb_003883_060--Hb_004705_170 Hb_000976_140 Hb_000976_140 Hb_003883_060--Hb_000976_140 Hb_003581_200 Hb_003581_200 Hb_003883_060--Hb_003581_200 Hb_000167_010 Hb_000167_010 Hb_003883_060--Hb_000167_010 Hb_000035_110 Hb_000035_110 Hb_001377_310--Hb_000035_110 Hb_000170_090 Hb_000170_090 Hb_001377_310--Hb_000170_090 Hb_005460_050 Hb_005460_050 Hb_001377_310--Hb_005460_050 Hb_001377_310--Hb_000373_080 Hb_001377_310--Hb_003861_050 Hb_004586_060 Hb_004586_060 Hb_001377_310--Hb_004586_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.14824 0.930875 1.60723 1.2889 0.847594 1.19342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0693 0.659379 0.728025 1.6866 1.19242

CAGE analysis