Hb_002445_060

Information

Type -
Description -
Location Contig2445: 125407-135052
Sequence    

Annotation

kegg
ID rcu:RCOM_1279410
description arf gtpase-activating protein, putative
nr
ID XP_002527677.1
description arf gtpase-activating protein, putative [Ricinus communis]
swissprot
ID Q8H100
description Probable ADP-ribosylation factor GTPase-activating protein AGD8 OS=Arabidopsis thaliana GN=AGD8 PE=1 SV=1
trembl
ID B9SNV8
description Arf gtpase-activating protein, putative OS=Ricinus communis GN=RCOM_1279410 PE=4 SV=1
Gene Ontology
ID GO:0005096
description probable adp-ribosylation factor gtpase-activating protein agd8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25503: 125475-134925 , PASA_asmbl_25504: 127416-127812 , PASA_asmbl_25505: 129045-129153
cDNA
(Sanger)
(ID:Location)		 021_P03.ab1: 129762-134925

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002445_060 0.0 - - arf gtpase-activating protein, putative [Ricinus communis]
2 Hb_000215_300 0.0666852375 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
3 Hb_006059_040 0.0741066286 transcription factor TF Family: SOH1 hypothetical protein PHAVU_007G063000g [Phaseolus vulgaris]
4 Hb_000140_290 0.0759671159 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Populus euphratica]
5 Hb_006588_170 0.0760171681 - - PREDICTED: OTU domain-containing protein At3g57810 [Jatropha curcas]
6 Hb_004705_170 0.0763183493 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
7 Hb_003177_020 0.0782110501 - - diphthine synthase, putative [Ricinus communis]
8 Hb_003883_060 0.081331165 transcription factor TF Family: BSD PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Jatropha curcas]
9 Hb_004452_110 0.0831071872 - - PREDICTED: uncharacterized protein LOC105639575 isoform X1 [Jatropha curcas]
10 Hb_003376_330 0.0854268348 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
11 Hb_005797_010 0.0863900862 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
12 Hb_004586_300 0.0865334733 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
13 Hb_105328_020 0.0866979557 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
14 Hb_000976_140 0.0871435771 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
15 Hb_000170_090 0.0879361482 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
16 Hb_023313_030 0.0888537337 - - conserved hypothetical protein [Ricinus communis]
17 Hb_168978_010 0.089535387 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
18 Hb_093458_040 0.0899886064 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
19 Hb_000392_420 0.0907407779 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
20 Hb_005634_010 0.0908622159 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002445_060 Hb_002445_060 Hb_000215_300 Hb_000215_300 Hb_002445_060--Hb_000215_300 Hb_006059_040 Hb_006059_040 Hb_002445_060--Hb_006059_040 Hb_000140_290 Hb_000140_290 Hb_002445_060--Hb_000140_290 Hb_006588_170 Hb_006588_170 Hb_002445_060--Hb_006588_170 Hb_004705_170 Hb_004705_170 Hb_002445_060--Hb_004705_170 Hb_003177_020 Hb_003177_020 Hb_002445_060--Hb_003177_020 Hb_000215_300--Hb_004705_170 Hb_086063_020 Hb_086063_020 Hb_000215_300--Hb_086063_020 Hb_000345_160 Hb_000345_160 Hb_000215_300--Hb_000345_160 Hb_000258_110 Hb_000258_110 Hb_000215_300--Hb_000258_110 Hb_004037_020 Hb_004037_020 Hb_000215_300--Hb_004037_020 Hb_007472_070 Hb_007472_070 Hb_000215_300--Hb_007472_070 Hb_000069_380 Hb_000069_380 Hb_006059_040--Hb_000069_380 Hb_000708_030 Hb_000708_030 Hb_006059_040--Hb_000708_030 Hb_005730_040 Hb_005730_040 Hb_006059_040--Hb_005730_040 Hb_006059_040--Hb_007472_070 Hb_000976_140 Hb_000976_140 Hb_006059_040--Hb_000976_140 Hb_006570_080 Hb_006570_080 Hb_006059_040--Hb_006570_080 Hb_005634_010 Hb_005634_010 Hb_000140_290--Hb_005634_010 Hb_010142_020 Hb_010142_020 Hb_000140_290--Hb_010142_020 Hb_000556_120 Hb_000556_120 Hb_000140_290--Hb_000556_120 Hb_001500_140 Hb_001500_140 Hb_000140_290--Hb_001500_140 Hb_093458_040 Hb_093458_040 Hb_000140_290--Hb_093458_040 Hb_013726_090 Hb_013726_090 Hb_000140_290--Hb_013726_090 Hb_105328_020 Hb_105328_020 Hb_006588_170--Hb_105328_020 Hb_013399_020 Hb_013399_020 Hb_006588_170--Hb_013399_020 Hb_000170_090 Hb_000170_090 Hb_006588_170--Hb_000170_090 Hb_000345_380 Hb_000345_380 Hb_006588_170--Hb_000345_380 Hb_001860_030 Hb_001860_030 Hb_006588_170--Hb_001860_030 Hb_000107_230 Hb_000107_230 Hb_006588_170--Hb_000107_230 Hb_004705_170--Hb_007472_070 Hb_004705_170--Hb_000345_160 Hb_004705_170--Hb_004037_020 Hb_000778_010 Hb_000778_010 Hb_004705_170--Hb_000778_010 Hb_163175_010 Hb_163175_010 Hb_004705_170--Hb_163175_010 Hb_002471_240 Hb_002471_240 Hb_003177_020--Hb_002471_240 Hb_003363_080 Hb_003363_080 Hb_003177_020--Hb_003363_080 Hb_002889_010 Hb_002889_010 Hb_003177_020--Hb_002889_010 Hb_002445_100 Hb_002445_100 Hb_003177_020--Hb_002445_100 Hb_001377_310 Hb_001377_310 Hb_003177_020--Hb_001377_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.3843 35.8775 45.5713 59.5582 23.0234 38.0896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.6712 31.8985 27.9728 45.5405 32.0733

CAGE analysis