Hb_003363_080

Information

Type -
Description -
Location Contig3363: 91779-94871
Sequence    

Annotation

kegg
ID vvi:100264325
description elongation factor 1-gamma-like
nr
ID ADR70876.1
description eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
swissprot
ID Q9FUM1
description Elongation factor 1-gamma OS=Prunus avium PE=2 SV=1
trembl
ID V5IV11
description Eukaryotic translation elongation factor 1B gamma-subunit OS=Hevea brasiliensis GN=EF1Bgamma PE=2 SV=1
Gene Ontology
ID GO:0003746
description elongation factor 1-gamma-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35221: 91824-94828
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003363_080 0.0 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
2 Hb_007062_030 0.0648220912 - - hypothetical protein VITISV_039033 [Vitis vinifera]
3 Hb_000170_090 0.067493103 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
4 Hb_005765_010 0.0678421647 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 isoform X1 [Jatropha curcas]
5 Hb_001377_310 0.0681345588 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
6 Hb_003177_020 0.0726140432 - - diphthine synthase, putative [Ricinus communis]
7 Hb_000981_030 0.0770681216 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
8 Hb_105328_020 0.0772854732 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
9 Hb_005460_050 0.0797700202 - - COR413-PM2, putative [Ricinus communis]
10 Hb_007657_020 0.0808093489 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
11 Hb_001946_340 0.0808238644 - - PREDICTED: mediator of RNA polymerase II transcription subunit 17-like isoform X1 [Jatropha curcas]
12 Hb_021374_010 0.0832718933 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-A1 [Populus euphratica]
13 Hb_002471_240 0.0845428676 - - PREDICTED: protein POLLEN DEFECTIVE IN GUIDANCE 1 isoform X1 [Jatropha curcas]
14 Hb_000035_110 0.0860972943 - - PREDICTED: transcription initiation factor TFIID subunit 5 [Jatropha curcas]
15 Hb_000082_010 0.0874144273 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
16 Hb_002681_090 0.0877378881 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
17 Hb_000261_240 0.0885579216 - - RecName: Full=Elongation factor 1-alpha; Short=EF-1-alpha [Manihot esculenta]
18 Hb_000182_040 0.088587957 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 24 [Jatropha curcas]
19 Hb_001856_180 0.0888669701 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
20 Hb_001860_030 0.090145832 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X5 [Jatropha curcas]

Gene co-expression network

sample Hb_003363_080 Hb_003363_080 Hb_007062_030 Hb_007062_030 Hb_003363_080--Hb_007062_030 Hb_000170_090 Hb_000170_090 Hb_003363_080--Hb_000170_090 Hb_005765_010 Hb_005765_010 Hb_003363_080--Hb_005765_010 Hb_001377_310 Hb_001377_310 Hb_003363_080--Hb_001377_310 Hb_003177_020 Hb_003177_020 Hb_003363_080--Hb_003177_020 Hb_000981_030 Hb_000981_030 Hb_003363_080--Hb_000981_030 Hb_007062_030--Hb_005765_010 Hb_002492_010 Hb_002492_010 Hb_007062_030--Hb_002492_010 Hb_001946_340 Hb_001946_340 Hb_007062_030--Hb_001946_340 Hb_012092_060 Hb_012092_060 Hb_007062_030--Hb_012092_060 Hb_007062_030--Hb_000170_090 Hb_105328_020 Hb_105328_020 Hb_000170_090--Hb_105328_020 Hb_000170_090--Hb_001377_310 Hb_004586_220 Hb_004586_220 Hb_000170_090--Hb_004586_220 Hb_013399_020 Hb_013399_020 Hb_000170_090--Hb_013399_020 Hb_000976_140 Hb_000976_140 Hb_000170_090--Hb_000976_140 Hb_000345_160 Hb_000345_160 Hb_000170_090--Hb_000345_160 Hb_000083_120 Hb_000083_120 Hb_005765_010--Hb_000083_120 Hb_005765_010--Hb_105328_020 Hb_001500_140 Hb_001500_140 Hb_005765_010--Hb_001500_140 Hb_005765_010--Hb_000981_030 Hb_000035_110 Hb_000035_110 Hb_001377_310--Hb_000035_110 Hb_005460_050 Hb_005460_050 Hb_001377_310--Hb_005460_050 Hb_000373_080 Hb_000373_080 Hb_001377_310--Hb_000373_080 Hb_003861_050 Hb_003861_050 Hb_001377_310--Hb_003861_050 Hb_004586_060 Hb_004586_060 Hb_001377_310--Hb_004586_060 Hb_002471_240 Hb_002471_240 Hb_003177_020--Hb_002471_240 Hb_002445_060 Hb_002445_060 Hb_003177_020--Hb_002445_060 Hb_002889_010 Hb_002889_010 Hb_003177_020--Hb_002889_010 Hb_002445_100 Hb_002445_100 Hb_003177_020--Hb_002445_100 Hb_003177_020--Hb_001377_310 Hb_000981_030--Hb_001500_140 Hb_179306_020 Hb_179306_020 Hb_000981_030--Hb_179306_020 Hb_001860_030 Hb_001860_030 Hb_000981_030--Hb_001860_030 Hb_006520_040 Hb_006520_040 Hb_000981_030--Hb_006520_040 Hb_005663_110 Hb_005663_110 Hb_000981_030--Hb_005663_110 Hb_000981_030--Hb_000170_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.0038 71.0804 82.8762 88.3803 47.3661 104.487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.985 42.1969 44.1794 93.9722 53.4958

CAGE analysis