Hb_000981_030

Information

Type transcription factor
Description TF Family: mTERF
Location Contig981: 96906-105501
Sequence    

Annotation

kegg
ID rcu:RCOM_1469290
description hypothetical protein
nr
ID XP_012080407.1
description PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KHP7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11745 PE=4 SV=1
Gene Ontology
ID GO:0003676
description mitochondrial transcription termination factor-related family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64399: 100393-100698 , PASA_asmbl_64401: 101374-101678
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000981_030 0.0 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
2 Hb_001500_140 0.0638088515 - - pelota, putative [Ricinus communis]
3 Hb_179306_020 0.0649209094 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
4 Hb_001860_030 0.0668208334 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X5 [Jatropha curcas]
5 Hb_006520_040 0.0673256424 - - PREDICTED: uncharacterized protein LOC105641714 isoform X2 [Jatropha curcas]
6 Hb_005663_110 0.0693557884 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
7 Hb_000170_090 0.0693903096 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
8 Hb_102698_010 0.0702903186 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
9 Hb_001434_080 0.0725860563 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
10 Hb_004586_220 0.0749955553 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
11 Hb_007062_030 0.0753192832 - - hypothetical protein VITISV_039033 [Vitis vinifera]
12 Hb_105328_020 0.0753537654 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
13 Hb_003363_080 0.0770681216 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
14 Hb_005765_010 0.0790287129 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 isoform X1 [Jatropha curcas]
15 Hb_004324_130 0.0796674894 - - polypyrimidine tract binding protein, putative [Ricinus communis]
16 Hb_000836_460 0.0798335697 - - PREDICTED: uncharacterized protein LOC105628435 [Jatropha curcas]
17 Hb_002681_090 0.0798809396 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
18 Hb_000089_180 0.0800044689 - - PREDICTED: homoserine kinase-like [Jatropha curcas]
19 Hb_000140_290 0.0803236789 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Populus euphratica]
20 Hb_039946_050 0.0820989567 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_000981_030 Hb_000981_030 Hb_001500_140 Hb_001500_140 Hb_000981_030--Hb_001500_140 Hb_179306_020 Hb_179306_020 Hb_000981_030--Hb_179306_020 Hb_001860_030 Hb_001860_030 Hb_000981_030--Hb_001860_030 Hb_006520_040 Hb_006520_040 Hb_000981_030--Hb_006520_040 Hb_005663_110 Hb_005663_110 Hb_000981_030--Hb_005663_110 Hb_000170_090 Hb_000170_090 Hb_000981_030--Hb_000170_090 Hb_001584_120 Hb_001584_120 Hb_001500_140--Hb_001584_120 Hb_010142_020 Hb_010142_020 Hb_001500_140--Hb_010142_020 Hb_093458_040 Hb_093458_040 Hb_001500_140--Hb_093458_040 Hb_001999_310 Hb_001999_310 Hb_001500_140--Hb_001999_310 Hb_000140_290 Hb_000140_290 Hb_001500_140--Hb_000140_290 Hb_000574_450 Hb_000574_450 Hb_001500_140--Hb_000574_450 Hb_002968_080 Hb_002968_080 Hb_179306_020--Hb_002968_080 Hb_179306_020--Hb_005663_110 Hb_003055_040 Hb_003055_040 Hb_179306_020--Hb_003055_040 Hb_011674_020 Hb_011674_020 Hb_179306_020--Hb_011674_020 Hb_039946_050 Hb_039946_050 Hb_179306_020--Hb_039946_050 Hb_000062_270 Hb_000062_270 Hb_001860_030--Hb_000062_270 Hb_028512_020 Hb_028512_020 Hb_001860_030--Hb_028512_020 Hb_013399_020 Hb_013399_020 Hb_001860_030--Hb_013399_020 Hb_004324_130 Hb_004324_130 Hb_001860_030--Hb_004324_130 Hb_001635_090 Hb_001635_090 Hb_001860_030--Hb_001635_090 Hb_001225_040 Hb_001225_040 Hb_006520_040--Hb_001225_040 Hb_000920_300 Hb_000920_300 Hb_006520_040--Hb_000920_300 Hb_002026_210 Hb_002026_210 Hb_006520_040--Hb_002026_210 Hb_003517_040 Hb_003517_040 Hb_006520_040--Hb_003517_040 Hb_003913_070 Hb_003913_070 Hb_006520_040--Hb_003913_070 Hb_003544_030 Hb_003544_030 Hb_005663_110--Hb_003544_030 Hb_001434_080 Hb_001434_080 Hb_005663_110--Hb_001434_080 Hb_004677_050 Hb_004677_050 Hb_005663_110--Hb_004677_050 Hb_000984_170 Hb_000984_170 Hb_005663_110--Hb_000984_170 Hb_000327_250 Hb_000327_250 Hb_005663_110--Hb_000327_250 Hb_005663_110--Hb_039946_050 Hb_105328_020 Hb_105328_020 Hb_000170_090--Hb_105328_020 Hb_001377_310 Hb_001377_310 Hb_000170_090--Hb_001377_310 Hb_004586_220 Hb_004586_220 Hb_000170_090--Hb_004586_220 Hb_000170_090--Hb_013399_020 Hb_000976_140 Hb_000976_140 Hb_000170_090--Hb_000976_140 Hb_000345_160 Hb_000345_160 Hb_000170_090--Hb_000345_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.46578 1.82911 1.30935 2.24264 1.12415 2.00173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.53626 1.2525 1.10501 2.55234 1.5349

CAGE analysis