Hb_004324_130

Information

Type -
Description -
Location Contig4324: 91038-99749
Sequence    

Annotation

kegg
ID rcu:RCOM_1580390
description polypyrimidine tract binding protein, putative (EC:1.3.1.74)
nr
ID XP_002513582.1
description polypyrimidine tract binding protein, putative [Ricinus communis]
swissprot
ID Q9FGL9
description Polypyrimidine tract-binding protein homolog 2 OS=Arabidopsis thaliana GN=At5g53180 PE=1 SV=1
trembl
ID B9RIL3
description Polypyrimidine tract binding protein, putative OS=Ricinus communis GN=RCOM_1580390 PE=4 SV=1
Gene Ontology
ID GO:0000932
description polypyrimidine tract-binding protein homolog 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42316: 91027-99700
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_130 0.0 - - polypyrimidine tract binding protein, putative [Ricinus communis]
2 Hb_000181_400 0.0463043034 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
3 Hb_000111_290 0.0510569064 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
4 Hb_001876_050 0.0520071583 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
5 Hb_008725_230 0.0573797896 - - PREDICTED: CTP synthase [Jatropha curcas]
6 Hb_007416_120 0.0598331378 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
7 Hb_006831_140 0.0598634615 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
8 Hb_000028_180 0.0604606453 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
9 Hb_002456_010 0.0605902385 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
10 Hb_000556_120 0.0617510621 - - Spastin, putative [Ricinus communis]
11 Hb_002110_190 0.0622290209 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
12 Hb_003294_070 0.0641309025 - - hypothetical protein RCOM_1714550 [Ricinus communis]
13 Hb_001500_140 0.0643408285 - - pelota, putative [Ricinus communis]
14 Hb_001252_120 0.0644237052 - - PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Gossypium raimondii]
15 Hb_002026_210 0.0649320519 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
16 Hb_000083_120 0.0660640489 - - transcription factor, putative [Ricinus communis]
17 Hb_000868_090 0.066596153 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
18 Hb_001860_030 0.0669012066 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X5 [Jatropha curcas]
19 Hb_093458_040 0.068120106 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
20 Hb_001205_240 0.0689076474 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]

Gene co-expression network

sample Hb_004324_130 Hb_004324_130 Hb_000181_400 Hb_000181_400 Hb_004324_130--Hb_000181_400 Hb_000111_290 Hb_000111_290 Hb_004324_130--Hb_000111_290 Hb_001876_050 Hb_001876_050 Hb_004324_130--Hb_001876_050 Hb_008725_230 Hb_008725_230 Hb_004324_130--Hb_008725_230 Hb_007416_120 Hb_007416_120 Hb_004324_130--Hb_007416_120 Hb_006831_140 Hb_006831_140 Hb_004324_130--Hb_006831_140 Hb_000907_110 Hb_000907_110 Hb_000181_400--Hb_000907_110 Hb_003294_070 Hb_003294_070 Hb_000181_400--Hb_003294_070 Hb_000181_400--Hb_007416_120 Hb_000181_400--Hb_000111_290 Hb_000181_400--Hb_001876_050 Hb_001417_030 Hb_001417_030 Hb_000111_290--Hb_001417_030 Hb_002456_010 Hb_002456_010 Hb_000111_290--Hb_002456_010 Hb_003913_070 Hb_003913_070 Hb_000111_290--Hb_003913_070 Hb_000614_240 Hb_000614_240 Hb_000111_290--Hb_000614_240 Hb_001999_310 Hb_001999_310 Hb_000111_290--Hb_001999_310 Hb_001876_050--Hb_007416_120 Hb_001671_100 Hb_001671_100 Hb_001876_050--Hb_001671_100 Hb_001876_050--Hb_001999_310 Hb_001876_050--Hb_006831_140 Hb_001876_050--Hb_002456_010 Hb_002232_410 Hb_002232_410 Hb_008725_230--Hb_002232_410 Hb_001359_050 Hb_001359_050 Hb_008725_230--Hb_001359_050 Hb_001205_240 Hb_001205_240 Hb_008725_230--Hb_001205_240 Hb_000185_030 Hb_000185_030 Hb_008725_230--Hb_000185_030 Hb_000028_370 Hb_000028_370 Hb_008725_230--Hb_000028_370 Hb_007416_120--Hb_001671_100 Hb_007416_120--Hb_001999_310 Hb_007416_120--Hb_000111_290 Hb_000708_030 Hb_000708_030 Hb_006831_140--Hb_000708_030 Hb_000078_120 Hb_000078_120 Hb_006831_140--Hb_000078_120 Hb_093458_040 Hb_093458_040 Hb_006831_140--Hb_093458_040 Hb_001021_150 Hb_001021_150 Hb_006831_140--Hb_001021_150 Hb_002078_350 Hb_002078_350 Hb_006831_140--Hb_002078_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.904 32.7594 21.412 30.0284 23.7336 31.0022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.1955 28.2239 28.5063 40.2454 23.724

CAGE analysis