Hb_003055_040

Information

Type -
Description -
Location Contig3055: 16486-22914
Sequence    

Annotation

kegg
ID rcu:RCOM_1062750
description secretory carrier membrane protein, putative
nr
ID XP_012091529.1
description PREDICTED: secretory carrier-associated membrane protein 3-like isoform X1 [Jatropha curcas]
swissprot
ID A2YMP7
description Putative secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. indica GN=SCAMP1 PE=3 SV=1
trembl
ID A0A067JN11
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21380 PE=4 SV=1
Gene Ontology
ID GO:0016021
description secretory carrier-associated membrane protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32237: 16553-22872 , PASA_asmbl_32238: 22883-22984
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003055_040 0.0 - - PREDICTED: secretory carrier-associated membrane protein 3-like isoform X1 [Jatropha curcas]
2 Hb_179306_020 0.0738112723 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
3 Hb_001258_110 0.0835416768 - - transporter, putative [Ricinus communis]
4 Hb_007137_050 0.0853066247 - - Uncharacterized protein isoform 1 [Theobroma cacao]
5 Hb_000836_550 0.0868914635 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
6 Hb_004450_070 0.0883659477 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
7 Hb_001500_100 0.0894622862 - - conserved hypothetical protein [Ricinus communis]
8 Hb_019280_010 0.0905116522 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
9 Hb_000085_450 0.0937830678 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
10 Hb_003020_100 0.0958406472 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
11 Hb_005663_110 0.0968465977 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
12 Hb_001437_190 0.0974323951 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_002686_310 0.0978737195 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
14 Hb_000237_050 0.1000831322 - - CP2 [Hevea brasiliensis]
15 Hb_015026_130 0.1004177871 - - quinone oxidoreductase, putative [Ricinus communis]
16 Hb_143629_130 0.1004423044 - - unnamed protein product [Coffea canephora]
17 Hb_002995_040 0.1004864174 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
18 Hb_002284_250 0.1005495425 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
19 Hb_188063_050 0.102299654 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
20 Hb_000579_130 0.1023139835 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003055_040 Hb_003055_040 Hb_179306_020 Hb_179306_020 Hb_003055_040--Hb_179306_020 Hb_001258_110 Hb_001258_110 Hb_003055_040--Hb_001258_110 Hb_007137_050 Hb_007137_050 Hb_003055_040--Hb_007137_050 Hb_000836_550 Hb_000836_550 Hb_003055_040--Hb_000836_550 Hb_004450_070 Hb_004450_070 Hb_003055_040--Hb_004450_070 Hb_001500_100 Hb_001500_100 Hb_003055_040--Hb_001500_100 Hb_000981_030 Hb_000981_030 Hb_179306_020--Hb_000981_030 Hb_002968_080 Hb_002968_080 Hb_179306_020--Hb_002968_080 Hb_005663_110 Hb_005663_110 Hb_179306_020--Hb_005663_110 Hb_011674_020 Hb_011674_020 Hb_179306_020--Hb_011674_020 Hb_039946_050 Hb_039946_050 Hb_179306_020--Hb_039946_050 Hb_001014_210 Hb_001014_210 Hb_001258_110--Hb_001014_210 Hb_002284_250 Hb_002284_250 Hb_001258_110--Hb_002284_250 Hb_001258_110--Hb_005663_110 Hb_000130_180 Hb_000130_180 Hb_001258_110--Hb_000130_180 Hb_015026_130 Hb_015026_130 Hb_001258_110--Hb_015026_130 Hb_001434_080 Hb_001434_080 Hb_001258_110--Hb_001434_080 Hb_188063_050 Hb_188063_050 Hb_007137_050--Hb_188063_050 Hb_000085_450 Hb_000085_450 Hb_007137_050--Hb_000085_450 Hb_001097_040 Hb_001097_040 Hb_007137_050--Hb_001097_040 Hb_010042_030 Hb_010042_030 Hb_007137_050--Hb_010042_030 Hb_002740_090 Hb_002740_090 Hb_007137_050--Hb_002740_090 Hb_000579_130 Hb_000579_130 Hb_007137_050--Hb_000579_130 Hb_006573_210 Hb_006573_210 Hb_000836_550--Hb_006573_210 Hb_006910_060 Hb_006910_060 Hb_000836_550--Hb_006910_060 Hb_000836_550--Hb_015026_130 Hb_000836_550--Hb_001258_110 Hb_004987_020 Hb_004987_020 Hb_000836_550--Hb_004987_020 Hb_000890_070 Hb_000890_070 Hb_004450_070--Hb_000890_070 Hb_019280_010 Hb_019280_010 Hb_004450_070--Hb_019280_010 Hb_000152_700 Hb_000152_700 Hb_004450_070--Hb_000152_700 Hb_001642_070 Hb_001642_070 Hb_004450_070--Hb_001642_070 Hb_004677_050 Hb_004677_050 Hb_004450_070--Hb_004677_050 Hb_000237_050 Hb_000237_050 Hb_004450_070--Hb_000237_050 Hb_003020_100 Hb_003020_100 Hb_001500_100--Hb_003020_100 Hb_000322_080 Hb_000322_080 Hb_001500_100--Hb_000322_080 Hb_001500_100--Hb_019280_010 Hb_003544_050 Hb_003544_050 Hb_001500_100--Hb_003544_050 Hb_001500_100--Hb_001434_080 Hb_006452_120 Hb_006452_120 Hb_001500_100--Hb_006452_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.2619 25.9595 15.7773 45.6529 12.0053 26.5559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.5674 12.4519 11.9836 41.2046 22.3662

CAGE analysis