Hb_006573_210

Information

Type -
Description -
Location Contig6573: 137388-142160
Sequence    

Annotation

kegg
ID rcu:RCOM_1581910
description chaperone binding protein, putative
nr
ID XP_012090164.1
description PREDICTED: protein SGT1 homolog [Jatropha curcas]
swissprot
ID Q0JL44
description Protein SGT1 homolog OS=Oryza sativa subsp. japonica GN=SGT1 PE=1 SV=1
trembl
ID A0A067JEI7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26038 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52825: 137429-142090
cDNA
(Sanger)
(ID:Location)		 024_D01.ab1: 137591-139993

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006573_210 0.0 - - PREDICTED: protein SGT1 homolog [Jatropha curcas]
2 Hb_006910_060 0.0600166644 - - PREDICTED: MACPF domain-containing protein At1g14780-like [Jatropha curcas]
3 Hb_011849_040 0.0826627141 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_011287_050 0.0869183923 - - PREDICTED: uncharacterized protein LOC105644786 [Jatropha curcas]
5 Hb_000487_380 0.0872526164 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
6 Hb_000406_110 0.0877052409 - - PREDICTED: transmembrane protein adipocyte-associated 1 [Jatropha curcas]
7 Hb_015026_130 0.0919652042 - - quinone oxidoreductase, putative [Ricinus communis]
8 Hb_031527_030 0.0926206133 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
9 Hb_005568_040 0.0926398228 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
10 Hb_000009_500 0.0926806516 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
11 Hb_002284_250 0.0933059919 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
12 Hb_000479_240 0.0937329897 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
13 Hb_010809_010 0.0948338898 - - Na+/H+ antiporter [Populus euphratica]
14 Hb_003912_070 0.0949980916 - - PREDICTED: nuclear pore complex protein NUP85 [Jatropha curcas]
15 Hb_000089_180 0.0951803484 - - PREDICTED: homoserine kinase-like [Jatropha curcas]
16 Hb_000836_550 0.0955581699 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
17 Hb_001258_110 0.096510314 - - transporter, putative [Ricinus communis]
18 Hb_000069_480 0.0971843512 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000402_230 0.0977333414 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
20 Hb_004645_070 0.0982976688 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]

Gene co-expression network

sample Hb_006573_210 Hb_006573_210 Hb_006910_060 Hb_006910_060 Hb_006573_210--Hb_006910_060 Hb_011849_040 Hb_011849_040 Hb_006573_210--Hb_011849_040 Hb_011287_050 Hb_011287_050 Hb_006573_210--Hb_011287_050 Hb_000487_380 Hb_000487_380 Hb_006573_210--Hb_000487_380 Hb_000406_110 Hb_000406_110 Hb_006573_210--Hb_000406_110 Hb_015026_130 Hb_015026_130 Hb_006573_210--Hb_015026_130 Hb_000479_240 Hb_000479_240 Hb_006910_060--Hb_000479_240 Hb_001167_050 Hb_001167_050 Hb_006910_060--Hb_001167_050 Hb_000579_130 Hb_000579_130 Hb_006910_060--Hb_000579_130 Hb_031527_030 Hb_031527_030 Hb_006910_060--Hb_031527_030 Hb_000069_480 Hb_000069_480 Hb_006910_060--Hb_000069_480 Hb_000009_500 Hb_000009_500 Hb_011849_040--Hb_000009_500 Hb_079326_020 Hb_079326_020 Hb_011849_040--Hb_079326_020 Hb_000402_230 Hb_000402_230 Hb_011849_040--Hb_000402_230 Hb_002026_210 Hb_002026_210 Hb_011849_040--Hb_002026_210 Hb_004143_100 Hb_004143_100 Hb_011849_040--Hb_004143_100 Hb_000614_210 Hb_000614_210 Hb_011849_040--Hb_000614_210 Hb_001105_160 Hb_001105_160 Hb_011287_050--Hb_001105_160 Hb_003912_070 Hb_003912_070 Hb_011287_050--Hb_003912_070 Hb_005568_040 Hb_005568_040 Hb_011287_050--Hb_005568_040 Hb_012092_060 Hb_012092_060 Hb_011287_050--Hb_012092_060 Hb_061878_010 Hb_061878_010 Hb_011287_050--Hb_061878_010 Hb_011287_050--Hb_000487_380 Hb_002046_020 Hb_002046_020 Hb_000487_380--Hb_002046_020 Hb_004586_290 Hb_004586_290 Hb_000487_380--Hb_004586_290 Hb_011242_060 Hb_011242_060 Hb_000487_380--Hb_011242_060 Hb_003078_020 Hb_003078_020 Hb_000487_380--Hb_003078_020 Hb_000487_380--Hb_005568_040 Hb_002400_140 Hb_002400_140 Hb_000406_110--Hb_002400_140 Hb_144744_010 Hb_144744_010 Hb_000406_110--Hb_144744_010 Hb_004648_050 Hb_004648_050 Hb_000406_110--Hb_004648_050 Hb_000059_020 Hb_000059_020 Hb_000406_110--Hb_000059_020 Hb_032808_030 Hb_032808_030 Hb_000406_110--Hb_032808_030 Hb_000089_180 Hb_000089_180 Hb_015026_130--Hb_000089_180 Hb_000085_450 Hb_000085_450 Hb_015026_130--Hb_000085_450 Hb_001114_110 Hb_001114_110 Hb_015026_130--Hb_001114_110 Hb_004128_130 Hb_004128_130 Hb_015026_130--Hb_004128_130 Hb_001141_310 Hb_001141_310 Hb_015026_130--Hb_001141_310 Hb_001258_110 Hb_001258_110 Hb_015026_130--Hb_001258_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.3189 231.79 81.2303 224.651 95.6774 135.32
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
99.1449 65.4418 79.8931 143.546 100.636

CAGE analysis