Hb_001105_160

Information

Type -
Description -
Location Contig1105: 109541-115258
Sequence    

Annotation

kegg
ID rcu:RCOM_1342130
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012083043.1
description PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
swissprot
ID Q8RWN7
description Protein phosphatase 2C 32 OS=Arabidopsis thaliana GN=POL PE=1 SV=2
trembl
ID A0A067K7X1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14136 PE=4 SV=1
Gene Ontology
ID GO:0004722
description protein phosphatase 2c 32

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03305: 109544-113932 , PASA_asmbl_03306: 115112-115325
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001105_160 0.0 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
2 Hb_011287_050 0.057380786 - - PREDICTED: uncharacterized protein LOC105644786 [Jatropha curcas]
3 Hb_041327_010 0.0770322491 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
4 Hb_005568_040 0.0778212439 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
5 Hb_012092_060 0.0790851293 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
6 Hb_071130_010 0.0803396003 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
7 Hb_010809_010 0.080583292 - - Na+/H+ antiporter [Populus euphratica]
8 Hb_039946_050 0.0817589903 - - catalytic, putative [Ricinus communis]
9 Hb_032808_030 0.0824615258 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
10 Hb_001167_050 0.0853734182 - - PREDICTED: uncharacterized protein LOC105648014 [Jatropha curcas]
11 Hb_012286_040 0.0854288268 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
12 Hb_000069_120 0.0857189527 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
13 Hb_000340_490 0.0862952134 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
14 Hb_000105_040 0.0872770859 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
15 Hb_003912_070 0.0873786175 - - PREDICTED: nuclear pore complex protein NUP85 [Jatropha curcas]
16 Hb_000069_410 0.0880355336 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
17 Hb_031527_030 0.0883526559 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
18 Hb_000037_220 0.0883698353 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
19 Hb_075315_010 0.0886019861 - - ornithine aminotransferase [Camellia sinensis]
20 Hb_083799_010 0.0893611934 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001105_160 Hb_001105_160 Hb_011287_050 Hb_011287_050 Hb_001105_160--Hb_011287_050 Hb_041327_010 Hb_041327_010 Hb_001105_160--Hb_041327_010 Hb_005568_040 Hb_005568_040 Hb_001105_160--Hb_005568_040 Hb_012092_060 Hb_012092_060 Hb_001105_160--Hb_012092_060 Hb_071130_010 Hb_071130_010 Hb_001105_160--Hb_071130_010 Hb_010809_010 Hb_010809_010 Hb_001105_160--Hb_010809_010 Hb_003912_070 Hb_003912_070 Hb_011287_050--Hb_003912_070 Hb_011287_050--Hb_005568_040 Hb_011287_050--Hb_012092_060 Hb_061878_010 Hb_061878_010 Hb_011287_050--Hb_061878_010 Hb_000487_380 Hb_000487_380 Hb_011287_050--Hb_000487_380 Hb_002639_080 Hb_002639_080 Hb_041327_010--Hb_002639_080 Hb_012286_040 Hb_012286_040 Hb_041327_010--Hb_012286_040 Hb_000261_480 Hb_000261_480 Hb_041327_010--Hb_000261_480 Hb_000230_260 Hb_000230_260 Hb_041327_010--Hb_000230_260 Hb_000069_120 Hb_000069_120 Hb_041327_010--Hb_000069_120 Hb_000537_050 Hb_000537_050 Hb_041327_010--Hb_000537_050 Hb_000479_240 Hb_000479_240 Hb_005568_040--Hb_000479_240 Hb_004645_070 Hb_004645_070 Hb_005568_040--Hb_004645_070 Hb_000331_580 Hb_000331_580 Hb_005568_040--Hb_000331_580 Hb_000008_240 Hb_000008_240 Hb_005568_040--Hb_000008_240 Hb_005568_040--Hb_003912_070 Hb_004586_290 Hb_004586_290 Hb_005568_040--Hb_004586_290 Hb_012092_060--Hb_003912_070 Hb_012092_060--Hb_000537_050 Hb_012092_060--Hb_005568_040 Hb_012092_060--Hb_012286_040 Hb_000003_100 Hb_000003_100 Hb_012092_060--Hb_000003_100 Hb_071130_010--Hb_000230_260 Hb_085781_020 Hb_085781_020 Hb_071130_010--Hb_085781_020 Hb_071130_010--Hb_000069_120 Hb_071130_010--Hb_002639_080 Hb_001188_020 Hb_001188_020 Hb_071130_010--Hb_001188_020 Hb_071130_010--Hb_041327_010 Hb_000105_040 Hb_000105_040 Hb_010809_010--Hb_000105_040 Hb_000049_150 Hb_000049_150 Hb_010809_010--Hb_000049_150 Hb_010809_010--Hb_005568_040 Hb_012055_040 Hb_012055_040 Hb_010809_010--Hb_012055_040 Hb_010809_010--Hb_000479_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.53469 7.94655 2.38058 6.21014 3.90703 5.18651
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.80579 2.29331 3.30812 8.2913 4.01512

CAGE analysis