Hb_010809_010

Information

Type -
Description -
Location Contig10809: 2470-8499
Sequence    

Annotation

kegg
ID cic:CICLE_v10000781mg
description hypothetical protein
nr
ID ABY86892.1
description Na+/H+ antiporter [Populus euphratica]
swissprot
ID Q56XP4
description Sodium/hydrogen exchanger 2 OS=Arabidopsis thaliana GN=NHX2 PE=2 SV=2
trembl
ID B1PC63
description Sodium/hydrogen exchanger OS=Populus euphratica GN=NHX2 PE=2 SV=1
Gene Ontology
ID GO:0005774
description sodium hydrogen exchanger 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02456: 2623-8282
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010809_010 0.0 - - Na+/H+ antiporter [Populus euphratica]
2 Hb_000105_040 0.0776258616 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
3 Hb_000049_150 0.0782003432 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
4 Hb_001105_160 0.080583292 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
5 Hb_005568_040 0.0813869184 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
6 Hb_012055_040 0.0815385652 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
7 Hb_000479_240 0.0831833288 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
8 Hb_000571_160 0.0866463008 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
9 Hb_071130_010 0.0868250238 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
10 Hb_031527_030 0.0870788716 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
11 Hb_000331_580 0.0879853489 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
12 Hb_004645_070 0.0883612907 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
13 Hb_006531_020 0.0890534445 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
14 Hb_007632_010 0.0891173938 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
15 Hb_011849_040 0.0893997593 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_000494_050 0.0894235643 - - cationic amino acid transporter, putative [Ricinus communis]
17 Hb_001628_070 0.0897633656 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_001167_050 0.0934238484 - - PREDICTED: uncharacterized protein LOC105648014 [Jatropha curcas]
19 Hb_000163_270 0.0934297716 - - PREDICTED: uncharacterized protein LOC105642512 [Jatropha curcas]
20 Hb_003581_170 0.0934896161 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_010809_010 Hb_010809_010 Hb_000105_040 Hb_000105_040 Hb_010809_010--Hb_000105_040 Hb_000049_150 Hb_000049_150 Hb_010809_010--Hb_000049_150 Hb_001105_160 Hb_001105_160 Hb_010809_010--Hb_001105_160 Hb_005568_040 Hb_005568_040 Hb_010809_010--Hb_005568_040 Hb_012055_040 Hb_012055_040 Hb_010809_010--Hb_012055_040 Hb_000479_240 Hb_000479_240 Hb_010809_010--Hb_000479_240 Hb_001935_140 Hb_001935_140 Hb_000105_040--Hb_001935_140 Hb_001699_280 Hb_001699_280 Hb_000105_040--Hb_001699_280 Hb_003581_170 Hb_003581_170 Hb_000105_040--Hb_003581_170 Hb_005542_140 Hb_005542_140 Hb_000105_040--Hb_005542_140 Hb_000069_410 Hb_000069_410 Hb_000105_040--Hb_000069_410 Hb_001951_170 Hb_001951_170 Hb_000105_040--Hb_001951_170 Hb_000571_160 Hb_000571_160 Hb_000049_150--Hb_000571_160 Hb_004109_380 Hb_004109_380 Hb_000049_150--Hb_004109_380 Hb_000170_100 Hb_000170_100 Hb_000049_150--Hb_000170_100 Hb_000049_150--Hb_000105_040 Hb_006531_020 Hb_006531_020 Hb_000049_150--Hb_006531_020 Hb_011287_050 Hb_011287_050 Hb_001105_160--Hb_011287_050 Hb_041327_010 Hb_041327_010 Hb_001105_160--Hb_041327_010 Hb_001105_160--Hb_005568_040 Hb_012092_060 Hb_012092_060 Hb_001105_160--Hb_012092_060 Hb_071130_010 Hb_071130_010 Hb_001105_160--Hb_071130_010 Hb_005568_040--Hb_000479_240 Hb_004645_070 Hb_004645_070 Hb_005568_040--Hb_004645_070 Hb_000331_580 Hb_000331_580 Hb_005568_040--Hb_000331_580 Hb_000008_240 Hb_000008_240 Hb_005568_040--Hb_000008_240 Hb_003912_070 Hb_003912_070 Hb_005568_040--Hb_003912_070 Hb_004586_290 Hb_004586_290 Hb_005568_040--Hb_004586_290 Hb_000494_050 Hb_000494_050 Hb_012055_040--Hb_000494_050 Hb_012518_070 Hb_012518_070 Hb_012055_040--Hb_012518_070 Hb_031527_030 Hb_031527_030 Hb_012055_040--Hb_031527_030 Hb_005215_010 Hb_005215_010 Hb_012055_040--Hb_005215_010 Hb_004410_120 Hb_004410_120 Hb_012055_040--Hb_004410_120 Hb_000317_100 Hb_000317_100 Hb_012055_040--Hb_000317_100 Hb_001904_030 Hb_001904_030 Hb_000479_240--Hb_001904_030 Hb_009252_050 Hb_009252_050 Hb_000479_240--Hb_009252_050 Hb_000479_240--Hb_000008_240 Hb_000479_240--Hb_004645_070 Hb_003604_050 Hb_003604_050 Hb_000479_240--Hb_003604_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.04287 34.4654 9.94216 26.1159 20.9773 17.5779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.98099 10.6308 13.6066 26.517 19.4931

CAGE analysis