Hb_012518_070

Information

Type -
Description -
Location Contig12518: 48503-57144
Sequence    

Annotation

kegg
ID rcu:RCOM_1314030
description Ubiquitin carboxyl-terminal hydrolase, putative (EC:3.1.2.15)
nr
ID XP_012086627.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
swissprot
ID Q93Y01
description Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana GN=UBP9 PE=2 SV=1
trembl
ID A0A067JZ20
description Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas GN=JCGZ_20376 PE=3 SV=1
Gene Ontology
ID GO:0004843
description ubiquitin-specific protease 9 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07700: 48597-57056 , PASA_asmbl_07701: 49809-52928
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012518_070 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
2 Hb_001440_020 0.0597552391 - - exocyst componenet sec8, putative [Ricinus communis]
3 Hb_012055_040 0.0603335521 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
4 Hb_000317_100 0.0606570196 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
5 Hb_012114_100 0.0617707314 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
6 Hb_005215_010 0.0641900988 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
7 Hb_000494_050 0.0646513295 - - cationic amino acid transporter, putative [Ricinus communis]
8 Hb_011819_020 0.064683049 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
9 Hb_000667_030 0.0665322061 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
10 Hb_000773_040 0.0669001614 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
11 Hb_002890_130 0.0685734569 - - tip120, putative [Ricinus communis]
12 Hb_016172_030 0.0703963073 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
13 Hb_000441_090 0.072306412 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
14 Hb_002989_020 0.0737922699 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
15 Hb_011249_070 0.07433532 - - hypothetical protein POPTR_0018s12610g [Populus trichocarpa]
16 Hb_003086_170 0.0745686453 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Jatropha curcas]
17 Hb_010515_020 0.074849724 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
18 Hb_002874_110 0.0748666367 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
19 Hb_002071_070 0.0771528536 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
20 Hb_004037_020 0.0782888436 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012518_070 Hb_012518_070 Hb_001440_020 Hb_001440_020 Hb_012518_070--Hb_001440_020 Hb_012055_040 Hb_012055_040 Hb_012518_070--Hb_012055_040 Hb_000317_100 Hb_000317_100 Hb_012518_070--Hb_000317_100 Hb_012114_100 Hb_012114_100 Hb_012518_070--Hb_012114_100 Hb_005215_010 Hb_005215_010 Hb_012518_070--Hb_005215_010 Hb_000494_050 Hb_000494_050 Hb_012518_070--Hb_000494_050 Hb_001440_020--Hb_012114_100 Hb_008511_020 Hb_008511_020 Hb_001440_020--Hb_008511_020 Hb_003097_140 Hb_003097_140 Hb_001440_020--Hb_003097_140 Hb_002675_030 Hb_002675_030 Hb_001440_020--Hb_002675_030 Hb_001329_250 Hb_001329_250 Hb_001440_020--Hb_001329_250 Hb_012055_040--Hb_000494_050 Hb_031527_030 Hb_031527_030 Hb_012055_040--Hb_031527_030 Hb_012055_040--Hb_005215_010 Hb_004410_120 Hb_004410_120 Hb_012055_040--Hb_004410_120 Hb_012055_040--Hb_000317_100 Hb_000317_100--Hb_005215_010 Hb_002890_130 Hb_002890_130 Hb_000317_100--Hb_002890_130 Hb_011819_020 Hb_011819_020 Hb_000317_100--Hb_011819_020 Hb_003040_050 Hb_003040_050 Hb_000317_100--Hb_003040_050 Hb_002411_110 Hb_002411_110 Hb_000317_100--Hb_002411_110 Hb_000773_040 Hb_000773_040 Hb_000317_100--Hb_000773_040 Hb_006452_120 Hb_006452_120 Hb_012114_100--Hb_006452_120 Hb_011249_070 Hb_011249_070 Hb_012114_100--Hb_011249_070 Hb_012114_100--Hb_012055_040 Hb_003498_080 Hb_003498_080 Hb_012114_100--Hb_003498_080 Hb_005215_010--Hb_002890_130 Hb_005215_010--Hb_011819_020 Hb_005215_010--Hb_000494_050 Hb_005215_010--Hb_003040_050 Hb_012760_100 Hb_012760_100 Hb_005215_010--Hb_012760_100 Hb_000123_180 Hb_000123_180 Hb_000494_050--Hb_000123_180 Hb_000494_050--Hb_011819_020 Hb_000494_050--Hb_000317_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.56044 13.2779 10.7067 19.3986 12.8757 9.7346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.80696 8.3736 9.79054 12.9558 15.9892

CAGE analysis