Hb_011249_070

Information

Type -
Description -
Location Contig11249: 75964-76782
Sequence    

Annotation

kegg
ID pop:POPTR_0018s12610g
description POPTRDRAFT_779714; hypothetical protein
nr
ID XP_006372155.1
description hypothetical protein POPTR_0018s12610g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9PD37
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s12610g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03854: 53516-76854 , PASA_asmbl_03856: 76872-78060
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011249_070 0.0 - - hypothetical protein POPTR_0018s12610g [Populus trichocarpa]
2 Hb_001712_060 0.0632075706 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 [Jatropha curcas]
3 Hb_012114_100 0.0641390414 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
4 Hb_000300_270 0.0673858544 - - cationic amino acid transporter, putative [Ricinus communis]
5 Hb_012055_040 0.0680627472 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
6 Hb_002883_030 0.0708784267 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
7 Hb_003498_080 0.0719990355 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
8 Hb_003040_050 0.0735503129 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
9 Hb_012518_070 0.07433532 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
10 Hb_004037_020 0.0781834193 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
11 Hb_000441_090 0.0811552769 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
12 Hb_000773_040 0.0812339905 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
13 Hb_001481_060 0.0813974795 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
14 Hb_000317_100 0.0814590442 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
15 Hb_001776_020 0.0822561011 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
16 Hb_009288_020 0.083478309 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
17 Hb_001329_250 0.084018961 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
18 Hb_000208_280 0.0848373204 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
19 Hb_010515_020 0.0851566788 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
20 Hb_079326_020 0.0852615593 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011249_070 Hb_011249_070 Hb_001712_060 Hb_001712_060 Hb_011249_070--Hb_001712_060 Hb_012114_100 Hb_012114_100 Hb_011249_070--Hb_012114_100 Hb_000300_270 Hb_000300_270 Hb_011249_070--Hb_000300_270 Hb_012055_040 Hb_012055_040 Hb_011249_070--Hb_012055_040 Hb_002883_030 Hb_002883_030 Hb_011249_070--Hb_002883_030 Hb_003498_080 Hb_003498_080 Hb_011249_070--Hb_003498_080 Hb_006775_130 Hb_006775_130 Hb_001712_060--Hb_006775_130 Hb_000482_190 Hb_000482_190 Hb_001712_060--Hb_000482_190 Hb_007763_070 Hb_007763_070 Hb_001712_060--Hb_007763_070 Hb_002046_160 Hb_002046_160 Hb_001712_060--Hb_002046_160 Hb_001712_060--Hb_000300_270 Hb_012518_070 Hb_012518_070 Hb_012114_100--Hb_012518_070 Hb_006452_120 Hb_006452_120 Hb_012114_100--Hb_006452_120 Hb_001440_020 Hb_001440_020 Hb_012114_100--Hb_001440_020 Hb_012114_100--Hb_012055_040 Hb_012114_100--Hb_003498_080 Hb_000049_020 Hb_000049_020 Hb_000300_270--Hb_000049_020 Hb_000300_270--Hb_002046_160 Hb_000256_150 Hb_000256_150 Hb_000300_270--Hb_000256_150 Hb_000300_270--Hb_002883_030 Hb_004452_110 Hb_004452_110 Hb_000300_270--Hb_004452_110 Hb_000345_160 Hb_000345_160 Hb_000300_270--Hb_000345_160 Hb_000494_050 Hb_000494_050 Hb_012055_040--Hb_000494_050 Hb_012055_040--Hb_012518_070 Hb_031527_030 Hb_031527_030 Hb_012055_040--Hb_031527_030 Hb_005215_010 Hb_005215_010 Hb_012055_040--Hb_005215_010 Hb_004410_120 Hb_004410_120 Hb_012055_040--Hb_004410_120 Hb_000317_100 Hb_000317_100 Hb_012055_040--Hb_000317_100 Hb_002883_030--Hb_000345_160 Hb_002897_090 Hb_002897_090 Hb_002883_030--Hb_002897_090 Hb_001662_100 Hb_001662_100 Hb_002883_030--Hb_001662_100 Hb_002883_030--Hb_000049_020 Hb_004037_020 Hb_004037_020 Hb_002883_030--Hb_004037_020 Hb_001329_250 Hb_001329_250 Hb_003498_080--Hb_001329_250 Hb_000212_420 Hb_000212_420 Hb_003498_080--Hb_000212_420 Hb_001776_020 Hb_001776_020 Hb_003498_080--Hb_001776_020 Hb_001481_060 Hb_001481_060 Hb_003498_080--Hb_001481_060 Hb_003040_050 Hb_003040_050 Hb_003498_080--Hb_003040_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.45317 12.6597 7.71178 15.1084 6.98219 9.51882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.69194 8.74562 6.62114 9.05074 13.7665

CAGE analysis