Hb_001712_060

Information

Type -
Description -
Location Contig1712: 54818-59365
Sequence    

Annotation

kegg
ID cic:CICLE_v10030737mg
description hypothetical protein
nr
ID XP_012081989.1
description PREDICTED: proline-rich receptor-like protein kinase PERK9 [Jatropha curcas]
swissprot
ID Q9C660
description Proline-rich receptor-like protein kinase PERK10 OS=Arabidopsis thaliana GN=PERK10 PE=2 SV=2
trembl
ID A0A067KAP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18251 PE=3 SV=1
Gene Ontology
ID GO:0004672
description proline-rich receptor-like protein kinase perk9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16009: 58444-58665 , PASA_asmbl_16011: 59795-59997
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001712_060 0.0 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 [Jatropha curcas]
2 Hb_006775_130 0.0576975061 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
3 Hb_011249_070 0.0632075706 - - hypothetical protein POPTR_0018s12610g [Populus trichocarpa]
4 Hb_000482_190 0.0639703507 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
5 Hb_007763_070 0.0641940878 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Jatropha curcas]
6 Hb_002046_160 0.0646595436 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_000300_270 0.0686504649 - - cationic amino acid transporter, putative [Ricinus communis]
8 Hb_001789_110 0.0686598519 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_000441_090 0.0691208563 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
10 Hb_009288_020 0.0754568289 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
11 Hb_003040_050 0.0764673276 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
12 Hb_001259_050 0.0801160034 - - calcium lipid binding protein, putative [Ricinus communis]
13 Hb_000258_070 0.0811110166 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
14 Hb_000193_330 0.0812998858 - - PREDICTED: formin-like protein 20 [Jatropha curcas]
15 Hb_000504_180 0.0857371268 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
16 Hb_002883_030 0.086170751 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
17 Hb_000465_280 0.0864502897 - - PREDICTED: pentatricopeptide repeat-containing protein At5g47360 [Jatropha curcas]
18 Hb_001377_190 0.0866616596 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
19 Hb_006913_020 0.0867572059 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
20 Hb_005582_040 0.0869246247 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001712_060 Hb_001712_060 Hb_006775_130 Hb_006775_130 Hb_001712_060--Hb_006775_130 Hb_011249_070 Hb_011249_070 Hb_001712_060--Hb_011249_070 Hb_000482_190 Hb_000482_190 Hb_001712_060--Hb_000482_190 Hb_007763_070 Hb_007763_070 Hb_001712_060--Hb_007763_070 Hb_002046_160 Hb_002046_160 Hb_001712_060--Hb_002046_160 Hb_000300_270 Hb_000300_270 Hb_001712_060--Hb_000300_270 Hb_006775_130--Hb_007763_070 Hb_000465_280 Hb_000465_280 Hb_006775_130--Hb_000465_280 Hb_005736_020 Hb_005736_020 Hb_006775_130--Hb_005736_020 Hb_006775_130--Hb_000482_190 Hb_000504_180 Hb_000504_180 Hb_006775_130--Hb_000504_180 Hb_012114_100 Hb_012114_100 Hb_011249_070--Hb_012114_100 Hb_011249_070--Hb_000300_270 Hb_012055_040 Hb_012055_040 Hb_011249_070--Hb_012055_040 Hb_002883_030 Hb_002883_030 Hb_011249_070--Hb_002883_030 Hb_003498_080 Hb_003498_080 Hb_011249_070--Hb_003498_080 Hb_001789_110 Hb_001789_110 Hb_000482_190--Hb_001789_110 Hb_000441_090 Hb_000441_090 Hb_000482_190--Hb_000441_090 Hb_003517_040 Hb_003517_040 Hb_000482_190--Hb_003517_040 Hb_001936_090 Hb_001936_090 Hb_000482_190--Hb_001936_090 Hb_000258_070 Hb_000258_070 Hb_000482_190--Hb_000258_070 Hb_000193_330 Hb_000193_330 Hb_007763_070--Hb_000193_330 Hb_007763_070--Hb_000465_280 Hb_007763_070--Hb_001789_110 Hb_000538_280 Hb_000538_280 Hb_007763_070--Hb_000538_280 Hb_002046_160--Hb_000300_270 Hb_004452_110 Hb_004452_110 Hb_002046_160--Hb_004452_110 Hb_000768_200 Hb_000768_200 Hb_002046_160--Hb_000768_200 Hb_003581_200 Hb_003581_200 Hb_002046_160--Hb_003581_200 Hb_006658_020 Hb_006658_020 Hb_002046_160--Hb_006658_020 Hb_000049_020 Hb_000049_020 Hb_000300_270--Hb_000049_020 Hb_000256_150 Hb_000256_150 Hb_000300_270--Hb_000256_150 Hb_000300_270--Hb_002883_030 Hb_000300_270--Hb_004452_110 Hb_000345_160 Hb_000345_160 Hb_000300_270--Hb_000345_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.80775 4.33887 2.95984 5.05658 2.72855 3.11882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.38535 3.79513 2.82163 2.84518 6.32155

CAGE analysis