Hb_004452_110

Information

Type -
Description -
Location Contig4452: 101101-107501
Sequence    

Annotation

kegg
ID rcu:RCOM_0553590
description hypothetical protein
nr
ID XP_012079049.1
description PREDICTED: uncharacterized protein LOC105639575 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KHR2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12246 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42962: 101117-107565 , PASA_asmbl_42964: 104856-107556
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004452_110 0.0 - - PREDICTED: uncharacterized protein LOC105639575 isoform X1 [Jatropha curcas]
2 Hb_000345_160 0.0552728269 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
3 Hb_000976_140 0.0568235849 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
4 Hb_000300_270 0.058030795 - - cationic amino acid transporter, putative [Ricinus communis]
5 Hb_002046_160 0.0587318571 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_005730_040 0.0600384702 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
7 Hb_000313_220 0.0604904833 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
8 Hb_000170_090 0.0650779736 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
9 Hb_003517_040 0.0653617951 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
10 Hb_006658_020 0.0654746229 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
11 Hb_003581_200 0.0659032351 - - PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]
12 Hb_000256_150 0.0668817809 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
13 Hb_000049_020 0.0676611824 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
14 Hb_003883_060 0.0687066656 transcription factor TF Family: BSD PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Jatropha curcas]
15 Hb_002849_130 0.0689344176 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
16 Hb_002414_050 0.0696141635 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]
17 Hb_002883_030 0.0699829758 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
18 Hb_004705_170 0.0724968714 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
19 Hb_000215_300 0.0727814095 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
20 Hb_015807_050 0.0728084476 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]

Gene co-expression network

sample Hb_004452_110 Hb_004452_110 Hb_000345_160 Hb_000345_160 Hb_004452_110--Hb_000345_160 Hb_000976_140 Hb_000976_140 Hb_004452_110--Hb_000976_140 Hb_000300_270 Hb_000300_270 Hb_004452_110--Hb_000300_270 Hb_002046_160 Hb_002046_160 Hb_004452_110--Hb_002046_160 Hb_005730_040 Hb_005730_040 Hb_004452_110--Hb_005730_040 Hb_000313_220 Hb_000313_220 Hb_004452_110--Hb_000313_220 Hb_004037_020 Hb_004037_020 Hb_000345_160--Hb_004037_020 Hb_004705_170 Hb_004705_170 Hb_000345_160--Hb_004705_170 Hb_001481_060 Hb_001481_060 Hb_000345_160--Hb_001481_060 Hb_000049_020 Hb_000049_020 Hb_000345_160--Hb_000049_020 Hb_000170_090 Hb_000170_090 Hb_000345_160--Hb_000170_090 Hb_000976_140--Hb_005730_040 Hb_000976_140--Hb_000313_220 Hb_002849_130 Hb_002849_130 Hb_000976_140--Hb_002849_130 Hb_015807_050 Hb_015807_050 Hb_000976_140--Hb_015807_050 Hb_001922_150 Hb_001922_150 Hb_000976_140--Hb_001922_150 Hb_000976_140--Hb_000170_090 Hb_000300_270--Hb_000049_020 Hb_000300_270--Hb_002046_160 Hb_000256_150 Hb_000256_150 Hb_000300_270--Hb_000256_150 Hb_002883_030 Hb_002883_030 Hb_000300_270--Hb_002883_030 Hb_000300_270--Hb_000345_160 Hb_001712_060 Hb_001712_060 Hb_002046_160--Hb_001712_060 Hb_000768_200 Hb_000768_200 Hb_002046_160--Hb_000768_200 Hb_003581_200 Hb_003581_200 Hb_002046_160--Hb_003581_200 Hb_006658_020 Hb_006658_020 Hb_002046_160--Hb_006658_020 Hb_005730_040--Hb_002849_130 Hb_005867_070 Hb_005867_070 Hb_005730_040--Hb_005867_070 Hb_000708_030 Hb_000708_030 Hb_005730_040--Hb_000708_030 Hb_005730_040--Hb_000170_090 Hb_001225_040 Hb_001225_040 Hb_005730_040--Hb_001225_040 Hb_000313_220--Hb_002849_130 Hb_000313_220--Hb_015807_050 Hb_001959_110 Hb_001959_110 Hb_000313_220--Hb_001959_110 Hb_000313_220--Hb_005730_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6503 11.8391 11.7165 17.9514 8.42373 13.471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9063 10.1576 8.66199 11.6558 15.7152

CAGE analysis