Hb_003581_200

Information

Type -
Description -
Location Contig3581: 152867-169651
Sequence    

Annotation

kegg
ID cic:CICLE_v10031710mg
description hypothetical protein
nr
ID XP_012079812.1
description PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K5R4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15347 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc knuckle family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36956: 152849-158779 , PASA_asmbl_36957: 155874-155980 , PASA_asmbl_36958: 158090-158761 , PASA_asmbl_36959: 163899-164050 , PASA_asmbl_36960: 160896-169577
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003581_200 0.0 - - PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]
2 Hb_005650_010 0.0483135535 - - ATP binding protein, putative [Ricinus communis]
3 Hb_000212_230 0.0532836581 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
4 Hb_002027_080 0.0604575438 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
5 Hb_000345_160 0.063130839 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
6 Hb_079526_040 0.0638676626 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
7 Hb_001518_080 0.0655260886 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
8 Hb_004452_110 0.0659032351 - - PREDICTED: uncharacterized protein LOC105639575 isoform X1 [Jatropha curcas]
9 Hb_000139_080 0.067990241 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
10 Hb_003883_060 0.0682033315 transcription factor TF Family: BSD PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Jatropha curcas]
11 Hb_002046_160 0.068513656 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_102698_010 0.069418126 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
13 Hb_073171_070 0.0701295623 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
14 Hb_006913_020 0.070222654 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
15 Hb_000049_020 0.070259373 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
16 Hb_000078_140 0.0714472339 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
17 Hb_013726_090 0.0730744944 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
18 Hb_003498_080 0.0730917263 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
19 Hb_007413_010 0.0734046221 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
20 Hb_001789_110 0.0744962097 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003581_200 Hb_003581_200 Hb_005650_010 Hb_005650_010 Hb_003581_200--Hb_005650_010 Hb_000212_230 Hb_000212_230 Hb_003581_200--Hb_000212_230 Hb_002027_080 Hb_002027_080 Hb_003581_200--Hb_002027_080 Hb_000345_160 Hb_000345_160 Hb_003581_200--Hb_000345_160 Hb_079526_040 Hb_079526_040 Hb_003581_200--Hb_079526_040 Hb_001518_080 Hb_001518_080 Hb_003581_200--Hb_001518_080 Hb_004679_030 Hb_004679_030 Hb_005650_010--Hb_004679_030 Hb_005650_010--Hb_002027_080 Hb_000046_500 Hb_000046_500 Hb_005650_010--Hb_000046_500 Hb_005650_010--Hb_079526_040 Hb_000359_210 Hb_000359_210 Hb_005650_010--Hb_000359_210 Hb_000016_210 Hb_000016_210 Hb_000212_230--Hb_000016_210 Hb_005588_080 Hb_005588_080 Hb_000212_230--Hb_005588_080 Hb_006913_020 Hb_006913_020 Hb_000212_230--Hb_006913_020 Hb_010863_050 Hb_010863_050 Hb_000212_230--Hb_010863_050 Hb_000521_250 Hb_000521_250 Hb_000212_230--Hb_000521_250 Hb_002897_090 Hb_002897_090 Hb_002027_080--Hb_002897_090 Hb_002027_080--Hb_001518_080 Hb_000441_090 Hb_000441_090 Hb_002027_080--Hb_000441_090 Hb_000773_040 Hb_000773_040 Hb_002027_080--Hb_000773_040 Hb_000635_090 Hb_000635_090 Hb_002027_080--Hb_000635_090 Hb_004037_020 Hb_004037_020 Hb_000345_160--Hb_004037_020 Hb_004705_170 Hb_004705_170 Hb_000345_160--Hb_004705_170 Hb_001481_060 Hb_001481_060 Hb_000345_160--Hb_001481_060 Hb_000049_020 Hb_000049_020 Hb_000345_160--Hb_000049_020 Hb_000170_090 Hb_000170_090 Hb_000345_160--Hb_000170_090 Hb_004452_110 Hb_004452_110 Hb_000345_160--Hb_004452_110 Hb_079526_040--Hb_001518_080 Hb_000078_140 Hb_000078_140 Hb_079526_040--Hb_000078_140 Hb_159809_070 Hb_159809_070 Hb_079526_040--Hb_159809_070 Hb_079526_040--Hb_000046_500 Hb_001518_080--Hb_000635_090 Hb_000214_050 Hb_000214_050 Hb_001518_080--Hb_000214_050 Hb_002811_270 Hb_002811_270 Hb_001518_080--Hb_002811_270 Hb_015807_050 Hb_015807_050 Hb_001518_080--Hb_015807_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.4504 13.2034 16.9546 21.0451 9.97351 12.7559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9502 9.69471 12.9527 16.6428 22.7929

CAGE analysis