Hb_000016_210

Information

Type -
Description -
Location Contig16: 216878-221497
Sequence    

Annotation

kegg
ID tcc:TCM_015081
description Per1-like family protein
nr
ID XP_012090327.1
description PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
swissprot
ID Q0VFE3
description Post-GPI attachment to proteins factor 3 OS=Xenopus tropicalis GN=pgap3 PE=2 SV=1
trembl
ID A0A067JEM0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26162 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14289: 219255-221339 , PASA_asmbl_14290: 217008-221350
cDNA
(Sanger)
(ID:Location)		 024_M02.ab1: 217008-219141

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000016_210 0.0 - - PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
2 Hb_000212_230 0.0552092905 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
3 Hb_003581_200 0.0768639385 - - PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]
4 Hb_000139_080 0.0777082517 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
5 Hb_001699_220 0.0832360814 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH121-like [Jatropha curcas]
6 Hb_002006_150 0.0862220125 - - copine, putative [Ricinus communis]
7 Hb_001957_020 0.0862921329 - - glutathione-S-transferase tau 1 [Hevea brasiliensis]
8 Hb_010863_050 0.0879098445 - - OTU domain-containing protein 6B, putative [Ricinus communis]
9 Hb_004452_120 0.0888481675 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
10 Hb_006189_020 0.0914209954 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
11 Hb_000521_250 0.0915700012 - - PREDICTED: protein N-terminal asparagine amidohydrolase isoform X2 [Jatropha curcas]
12 Hb_158530_020 0.0917937437 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
13 Hb_023371_020 0.0935278551 - - PREDICTED: uncharacterized protein LOC105633512 [Jatropha curcas]
14 Hb_000078_140 0.0945151746 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
15 Hb_133702_010 0.0950897523 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_004333_040 0.0962138085 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
17 Hb_005588_080 0.0964551937 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
18 Hb_002830_010 0.0973740189 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
19 Hb_006824_010 0.0976820651 - - PREDICTED: origin of replication complex subunit 4 [Jatropha curcas]
20 Hb_003626_070 0.0978305236 - - PREDICTED: golgin candidate 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000016_210 Hb_000016_210 Hb_000212_230 Hb_000212_230 Hb_000016_210--Hb_000212_230 Hb_003581_200 Hb_003581_200 Hb_000016_210--Hb_003581_200 Hb_000139_080 Hb_000139_080 Hb_000016_210--Hb_000139_080 Hb_001699_220 Hb_001699_220 Hb_000016_210--Hb_001699_220 Hb_002006_150 Hb_002006_150 Hb_000016_210--Hb_002006_150 Hb_001957_020 Hb_001957_020 Hb_000016_210--Hb_001957_020 Hb_000212_230--Hb_003581_200 Hb_005588_080 Hb_005588_080 Hb_000212_230--Hb_005588_080 Hb_006913_020 Hb_006913_020 Hb_000212_230--Hb_006913_020 Hb_010863_050 Hb_010863_050 Hb_000212_230--Hb_010863_050 Hb_000521_250 Hb_000521_250 Hb_000212_230--Hb_000521_250 Hb_005650_010 Hb_005650_010 Hb_003581_200--Hb_005650_010 Hb_002027_080 Hb_002027_080 Hb_003581_200--Hb_002027_080 Hb_000345_160 Hb_000345_160 Hb_003581_200--Hb_000345_160 Hb_079526_040 Hb_079526_040 Hb_003581_200--Hb_079526_040 Hb_001518_080 Hb_001518_080 Hb_003581_200--Hb_001518_080 Hb_003098_070 Hb_003098_070 Hb_000139_080--Hb_003098_070 Hb_033312_040 Hb_033312_040 Hb_000139_080--Hb_033312_040 Hb_000078_140 Hb_000078_140 Hb_000139_080--Hb_000078_140 Hb_006189_020 Hb_006189_020 Hb_000139_080--Hb_006189_020 Hb_003626_070 Hb_003626_070 Hb_000139_080--Hb_003626_070 Hb_000169_020 Hb_000169_020 Hb_000139_080--Hb_000169_020 Hb_004333_040 Hb_004333_040 Hb_001699_220--Hb_004333_040 Hb_010068_080 Hb_010068_080 Hb_001699_220--Hb_010068_080 Hb_003430_050 Hb_003430_050 Hb_001699_220--Hb_003430_050 Hb_006059_040 Hb_006059_040 Hb_001699_220--Hb_006059_040 Hb_000392_420 Hb_000392_420 Hb_001699_220--Hb_000392_420 Hb_007894_150 Hb_007894_150 Hb_001699_220--Hb_007894_150 Hb_006824_010 Hb_006824_010 Hb_002006_150--Hb_006824_010 Hb_002006_150--Hb_000139_080 Hb_002006_150--Hb_000078_140 Hb_015099_030 Hb_015099_030 Hb_002006_150--Hb_015099_030 Hb_002675_250 Hb_002675_250 Hb_002006_150--Hb_002675_250 Hb_000101_390 Hb_000101_390 Hb_002006_150--Hb_000101_390 Hb_001957_020--Hb_000212_230 Hb_000375_390 Hb_000375_390 Hb_001957_020--Hb_000375_390 Hb_000347_430 Hb_000347_430 Hb_001957_020--Hb_000347_430 Hb_000304_070 Hb_000304_070 Hb_001957_020--Hb_000304_070 Hb_001957_020--Hb_010863_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3089 18.074 25.9228 26.0749 12.4644 12.4379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.8627 11.9342 18.563 18.4599 28.952

CAGE analysis