Hb_001699_220

Information

Type transcription factor
Description TF Family: bHLH
Location Contig1699: 229579-232454
Sequence    

Annotation

kegg
ID rcu:RCOM_0870520
description DNA binding protein, putative
nr
ID XP_012065925.1
description PREDICTED: transcription factor bHLH121-like [Jatropha curcas]
swissprot
ID Q9LT23
description Transcription factor bHLH121 OS=Arabidopsis thaliana GN=BHLH121 PE=2 SV=1
trembl
ID A0A067LQD4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06542 PE=4 SV=1
Gene Ontology
ID GO:0009507
description transcription factor bhlh121

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15807: 231630-233754 , PASA_asmbl_15808: 229573-232461
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001699_220 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH121-like [Jatropha curcas]
2 Hb_004333_040 0.0709510563 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
3 Hb_010068_080 0.0710218866 - - PREDICTED: RNA-binding protein rsd1-like [Jatropha curcas]
4 Hb_003430_050 0.0728599013 - - PREDICTED: serine/arginine-rich splicing factor RSZ21A isoform X1 [Phoenix dactylifera]
5 Hb_006059_040 0.0746814325 transcription factor TF Family: SOH1 hypothetical protein PHAVU_007G063000g [Phaseolus vulgaris]
6 Hb_000392_420 0.0748058736 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
7 Hb_007894_150 0.0769265004 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
8 Hb_003861_060 0.0781316141 - - PREDICTED: treacle protein [Jatropha curcas]
9 Hb_009296_070 0.0786790842 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
10 Hb_000069_380 0.0795118155 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
11 Hb_003428_010 0.0801555685 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
12 Hb_000365_230 0.0809978621 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
13 Hb_189216_010 0.0810067978 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
14 Hb_005730_040 0.0817226438 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
15 Hb_003883_060 0.0821284269 transcription factor TF Family: BSD PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Jatropha curcas]
16 Hb_003878_090 0.0828443801 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
17 Hb_006913_020 0.0831586236 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
18 Hb_164390_010 0.0831830574 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
19 Hb_000016_210 0.0832360814 - - PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
20 Hb_000699_150 0.0837970083 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]

Gene co-expression network

sample Hb_001699_220 Hb_001699_220 Hb_004333_040 Hb_004333_040 Hb_001699_220--Hb_004333_040 Hb_010068_080 Hb_010068_080 Hb_001699_220--Hb_010068_080 Hb_003430_050 Hb_003430_050 Hb_001699_220--Hb_003430_050 Hb_006059_040 Hb_006059_040 Hb_001699_220--Hb_006059_040 Hb_000392_420 Hb_000392_420 Hb_001699_220--Hb_000392_420 Hb_007894_150 Hb_007894_150 Hb_001699_220--Hb_007894_150 Hb_006189_020 Hb_006189_020 Hb_004333_040--Hb_006189_020 Hb_033312_040 Hb_033312_040 Hb_004333_040--Hb_033312_040 Hb_000189_600 Hb_000189_600 Hb_004333_040--Hb_000189_600 Hb_000699_150 Hb_000699_150 Hb_004333_040--Hb_000699_150 Hb_000510_360 Hb_000510_360 Hb_004333_040--Hb_000510_360 Hb_183433_010 Hb_183433_010 Hb_004333_040--Hb_183433_010 Hb_003428_010 Hb_003428_010 Hb_010068_080--Hb_003428_010 Hb_003849_110 Hb_003849_110 Hb_010068_080--Hb_003849_110 Hb_001304_110 Hb_001304_110 Hb_010068_080--Hb_001304_110 Hb_000640_040 Hb_000640_040 Hb_010068_080--Hb_000640_040 Hb_002542_110 Hb_002542_110 Hb_010068_080--Hb_002542_110 Hb_000029_060 Hb_000029_060 Hb_010068_080--Hb_000029_060 Hb_007831_010 Hb_007831_010 Hb_003430_050--Hb_007831_010 Hb_003098_070 Hb_003098_070 Hb_003430_050--Hb_003098_070 Hb_000365_230 Hb_000365_230 Hb_003430_050--Hb_000365_230 Hb_163175_010 Hb_163175_010 Hb_003430_050--Hb_163175_010 Hb_003883_060 Hb_003883_060 Hb_003430_050--Hb_003883_060 Hb_003430_050--Hb_007894_150 Hb_000069_380 Hb_000069_380 Hb_006059_040--Hb_000069_380 Hb_000708_030 Hb_000708_030 Hb_006059_040--Hb_000708_030 Hb_005730_040 Hb_005730_040 Hb_006059_040--Hb_005730_040 Hb_007472_070 Hb_007472_070 Hb_006059_040--Hb_007472_070 Hb_000976_140 Hb_000976_140 Hb_006059_040--Hb_000976_140 Hb_006570_080 Hb_006570_080 Hb_006059_040--Hb_006570_080 Hb_000778_010 Hb_000778_010 Hb_000392_420--Hb_000778_010 Hb_003861_060 Hb_003861_060 Hb_000392_420--Hb_003861_060 Hb_002007_080 Hb_002007_080 Hb_000392_420--Hb_002007_080 Hb_164390_010 Hb_164390_010 Hb_000392_420--Hb_164390_010 Hb_003058_120 Hb_003058_120 Hb_000392_420--Hb_003058_120 Hb_093458_040 Hb_093458_040 Hb_000392_420--Hb_093458_040 Hb_004109_320 Hb_004109_320 Hb_007894_150--Hb_004109_320 Hb_007894_150--Hb_164390_010 Hb_007894_150--Hb_000365_230 Hb_007894_150--Hb_006189_020 Hb_005000_170 Hb_005000_170 Hb_007894_150--Hb_005000_170 Hb_001226_150 Hb_001226_150 Hb_007894_150--Hb_001226_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.3005 10.0725 13.0509 9.87864 4.47509 7.68903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5701 7.98291 9.0919 9.6916 10.3478

CAGE analysis