Hb_003430_050

Information

Type -
Description -
Location Contig3430: 36420-40823
Sequence    

Annotation

kegg
ID pda:103710054
description serine/arginine-rich splicing factor RSZ21A
nr
ID XP_008793862.1
description PREDICTED: serine/arginine-rich splicing factor RSZ21A isoform X1 [Phoenix dactylifera]
swissprot
ID Q69KL9
description Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp. japonica GN=RSZ21A PE=2 SV=1
trembl
ID A0A0D2R7E3
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G165700 PE=4 SV=1
Gene Ontology
ID GO:0000166
description serine arginine-rich splicing factor rsz21a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35868: 37232-40809
cDNA
(Sanger)
(ID:Location)		 018_C01.ab1: 37529-40807

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003430_050 0.0 - - PREDICTED: serine/arginine-rich splicing factor RSZ21A isoform X1 [Phoenix dactylifera]
2 Hb_007831_010 0.0643014342 - - PREDICTED: oligoribonuclease [Vitis vinifera]
3 Hb_003098_070 0.0648304075 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
4 Hb_000365_230 0.0720249417 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
5 Hb_163175_010 0.0721403626 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
6 Hb_003883_060 0.0723279551 transcription factor TF Family: BSD PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Jatropha curcas]
7 Hb_007894_150 0.0726334089 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
8 Hb_001699_220 0.0728599013 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH121-like [Jatropha curcas]
9 Hb_183433_010 0.0758967013 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
10 Hb_008114_040 0.0760541169 - - Fanconi anemia group D2 [Gossypium arboreum]
11 Hb_004333_040 0.0773573384 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
12 Hb_033312_040 0.0790640384 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
13 Hb_001518_080 0.0823195166 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
14 Hb_021374_030 0.0827156007 - - hypothetical protein RCOM_0351490 [Ricinus communis]
15 Hb_159809_070 0.0828128136 - - phospholipase A-2-activating protein, putative [Ricinus communis]
16 Hb_006189_020 0.0831370668 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
17 Hb_002400_340 0.0832888292 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
18 Hb_012506_030 0.0833570294 - - AP-2 complex subunit alpha, putative [Ricinus communis]
19 Hb_003861_060 0.0834418497 - - PREDICTED: treacle protein [Jatropha curcas]
20 Hb_006913_020 0.0835695386 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003430_050 Hb_003430_050 Hb_007831_010 Hb_007831_010 Hb_003430_050--Hb_007831_010 Hb_003098_070 Hb_003098_070 Hb_003430_050--Hb_003098_070 Hb_000365_230 Hb_000365_230 Hb_003430_050--Hb_000365_230 Hb_163175_010 Hb_163175_010 Hb_003430_050--Hb_163175_010 Hb_003883_060 Hb_003883_060 Hb_003430_050--Hb_003883_060 Hb_007894_150 Hb_007894_150 Hb_003430_050--Hb_007894_150 Hb_006153_070 Hb_006153_070 Hb_007831_010--Hb_006153_070 Hb_000207_150 Hb_000207_150 Hb_007831_010--Hb_000207_150 Hb_015807_050 Hb_015807_050 Hb_007831_010--Hb_015807_050 Hb_000107_230 Hb_000107_230 Hb_007831_010--Hb_000107_230 Hb_006588_170 Hb_006588_170 Hb_007831_010--Hb_006588_170 Hb_000139_080 Hb_000139_080 Hb_003098_070--Hb_000139_080 Hb_003098_070--Hb_000365_230 Hb_006189_020 Hb_006189_020 Hb_003098_070--Hb_006189_020 Hb_033312_040 Hb_033312_040 Hb_003098_070--Hb_033312_040 Hb_000476_060 Hb_000476_060 Hb_003098_070--Hb_000476_060 Hb_000078_140 Hb_000078_140 Hb_003098_070--Hb_000078_140 Hb_164390_010 Hb_164390_010 Hb_000365_230--Hb_164390_010 Hb_004109_320 Hb_004109_320 Hb_000365_230--Hb_004109_320 Hb_000365_230--Hb_007894_150 Hb_062226_130 Hb_062226_130 Hb_000365_230--Hb_062226_130 Hb_000778_010 Hb_000778_010 Hb_000365_230--Hb_000778_010 Hb_163175_010--Hb_164390_010 Hb_171900_090 Hb_171900_090 Hb_163175_010--Hb_171900_090 Hb_163175_010--Hb_000365_230 Hb_001959_110 Hb_001959_110 Hb_163175_010--Hb_001959_110 Hb_183433_010 Hb_183433_010 Hb_163175_010--Hb_183433_010 Hb_004705_170 Hb_004705_170 Hb_163175_010--Hb_004705_170 Hb_001301_150 Hb_001301_150 Hb_003883_060--Hb_001301_150 Hb_013726_090 Hb_013726_090 Hb_003883_060--Hb_013726_090 Hb_003883_060--Hb_004705_170 Hb_000976_140 Hb_000976_140 Hb_003883_060--Hb_000976_140 Hb_003581_200 Hb_003581_200 Hb_003883_060--Hb_003581_200 Hb_000167_010 Hb_000167_010 Hb_003883_060--Hb_000167_010 Hb_007894_150--Hb_004109_320 Hb_007894_150--Hb_164390_010 Hb_007894_150--Hb_006189_020 Hb_005000_170 Hb_005000_170 Hb_007894_150--Hb_005000_170 Hb_001226_150 Hb_001226_150 Hb_007894_150--Hb_001226_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.68536 8.98883 16.5504 12.8527 5.16815 10.5906
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.15314 9.08288 8.72 12.5222 11.3282

CAGE analysis