Hb_005000_170

Information

Type -
Description -
Location Contig5000: 162884-169273
Sequence    

Annotation

kegg
ID rcu:RCOM_1046940
description WD-repeat protein, putative (EC:2.3.1.48)
nr
ID XP_012076930.1
description PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
swissprot
ID O22607
description WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana GN=MSI4 PE=1 SV=3
trembl
ID A0A067KC97
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07407 PE=4 SV=1
Gene Ontology
ID GO:0004402
description wd-40 repeat-containing protein msi4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45809: 163007-169353
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_170 0.0 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
2 Hb_001226_150 0.0569984583 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
3 Hb_007894_150 0.0605085095 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
4 Hb_000329_800 0.0652715186 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004846_220 0.0667328355 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
6 Hb_002592_060 0.0674645267 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000441_220 0.0684629315 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_002889_010 0.06981731 - - ubx domain-containing, putative [Ricinus communis]
9 Hb_183510_020 0.0704105302 - - coated vesicle membrane protein, putative [Ricinus communis]
10 Hb_003861_050 0.0704533119 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
11 Hb_005867_070 0.070916655 - - DNA binding protein, putative [Ricinus communis]
12 Hb_028960_020 0.071327903 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
13 Hb_003861_060 0.0736585946 - - PREDICTED: treacle protein [Jatropha curcas]
14 Hb_123915_040 0.073722024 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
15 Hb_000260_630 0.0738051387 - - PREDICTED: altered inheritance rate of mitochondria protein 25 isoform X1 [Jatropha curcas]
16 Hb_006483_110 0.0739684094 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
17 Hb_013399_020 0.0751017878 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]
18 Hb_015807_050 0.0755476345 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
19 Hb_012506_030 0.075586824 - - AP-2 complex subunit alpha, putative [Ricinus communis]
20 Hb_014834_150 0.0759068864 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005000_170 Hb_005000_170 Hb_001226_150 Hb_001226_150 Hb_005000_170--Hb_001226_150 Hb_007894_150 Hb_007894_150 Hb_005000_170--Hb_007894_150 Hb_000329_800 Hb_000329_800 Hb_005000_170--Hb_000329_800 Hb_004846_220 Hb_004846_220 Hb_005000_170--Hb_004846_220 Hb_002592_060 Hb_002592_060 Hb_005000_170--Hb_002592_060 Hb_000441_220 Hb_000441_220 Hb_005000_170--Hb_000441_220 Hb_170416_010 Hb_170416_010 Hb_001226_150--Hb_170416_010 Hb_005867_070 Hb_005867_070 Hb_001226_150--Hb_005867_070 Hb_000339_040 Hb_000339_040 Hb_001226_150--Hb_000339_040 Hb_007007_120 Hb_007007_120 Hb_001226_150--Hb_007007_120 Hb_001226_150--Hb_007894_150 Hb_004109_320 Hb_004109_320 Hb_007894_150--Hb_004109_320 Hb_164390_010 Hb_164390_010 Hb_007894_150--Hb_164390_010 Hb_000365_230 Hb_000365_230 Hb_007894_150--Hb_000365_230 Hb_006189_020 Hb_006189_020 Hb_007894_150--Hb_006189_020 Hb_004319_080 Hb_004319_080 Hb_000329_800--Hb_004319_080 Hb_000035_470 Hb_000035_470 Hb_000329_800--Hb_000035_470 Hb_001301_150 Hb_001301_150 Hb_000329_800--Hb_001301_150 Hb_000329_800--Hb_004846_220 Hb_003159_140 Hb_003159_140 Hb_000329_800--Hb_003159_140 Hb_000138_100 Hb_000138_100 Hb_004846_220--Hb_000138_100 Hb_041290_020 Hb_041290_020 Hb_004846_220--Hb_041290_020 Hb_004846_220--Hb_002592_060 Hb_001021_150 Hb_001021_150 Hb_004846_220--Hb_001021_150 Hb_004254_090 Hb_004254_090 Hb_004846_220--Hb_004254_090 Hb_006483_110 Hb_006483_110 Hb_004846_220--Hb_006483_110 Hb_002592_060--Hb_001021_150 Hb_002263_020 Hb_002263_020 Hb_002592_060--Hb_002263_020 Hb_002592_060--Hb_004254_090 Hb_000317_050 Hb_000317_050 Hb_002592_060--Hb_000317_050 Hb_002592_060--Hb_006483_110 Hb_020378_030 Hb_020378_030 Hb_000441_220--Hb_020378_030 Hb_012506_030 Hb_012506_030 Hb_000441_220--Hb_012506_030 Hb_001221_080 Hb_001221_080 Hb_000441_220--Hb_001221_080 Hb_013399_020 Hb_013399_020 Hb_000441_220--Hb_013399_020 Hb_004586_220 Hb_004586_220 Hb_000441_220--Hb_004586_220 Hb_001205_120 Hb_001205_120 Hb_000441_220--Hb_001205_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4898 15.278 29.3272 18.0497 19.6449 18.8362
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.8486 16.8336 17.8316 22.7688 21.3429

CAGE analysis