Hb_000329_800

Information

Type -
Description -
Location Contig329: 594149-597004
Sequence    

Annotation

kegg
ID rcu:RCOM_1608840
description hypothetical protein
nr
ID XP_002511610.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SZH4
description RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana GN=PEP PE=2 SV=1
trembl
ID B9RD21
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1608840 PE=4 SV=1
Gene Ontology
ID GO:0003723
description poly -binding protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34595: 594406-597627 , PASA_asmbl_34596: 596360-596623 , PASA_asmbl_34598: 594406-595877
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_800 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004319_080 0.0578361447 - - PREDICTED: GPI ethanolamine phosphate transferase 1 [Jatropha curcas]
3 Hb_000035_470 0.0595542794 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
4 Hb_001301_150 0.0624628827 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
5 Hb_004846_220 0.0630919341 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
6 Hb_003159_140 0.065059163 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005000_170 0.0652715186 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
8 Hb_001876_050 0.0672707093 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
9 Hb_003883_060 0.0690414758 transcription factor TF Family: BSD PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Jatropha curcas]
10 Hb_163175_010 0.0697814393 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
11 Hb_002986_100 0.0698344373 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
12 Hb_006831_140 0.0704132341 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
13 Hb_000138_100 0.0707154851 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
14 Hb_001021_150 0.0713770218 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
15 Hb_183510_020 0.0728484767 - - coated vesicle membrane protein, putative [Ricinus communis]
16 Hb_168978_030 0.0745976652 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]
17 Hb_000006_040 0.0746246324 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
18 Hb_164390_010 0.0746980442 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
19 Hb_028960_020 0.0754671197 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
20 Hb_002439_010 0.0773249859 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000329_800 Hb_000329_800 Hb_004319_080 Hb_004319_080 Hb_000329_800--Hb_004319_080 Hb_000035_470 Hb_000035_470 Hb_000329_800--Hb_000035_470 Hb_001301_150 Hb_001301_150 Hb_000329_800--Hb_001301_150 Hb_004846_220 Hb_004846_220 Hb_000329_800--Hb_004846_220 Hb_003159_140 Hb_003159_140 Hb_000329_800--Hb_003159_140 Hb_005000_170 Hb_005000_170 Hb_000329_800--Hb_005000_170 Hb_004319_080--Hb_000035_470 Hb_004319_080--Hb_001301_150 Hb_001040_100 Hb_001040_100 Hb_004319_080--Hb_001040_100 Hb_003883_060 Hb_003883_060 Hb_004319_080--Hb_003883_060 Hb_000640_170 Hb_000640_170 Hb_004319_080--Hb_000640_170 Hb_015807_050 Hb_015807_050 Hb_000035_470--Hb_015807_050 Hb_001021_150 Hb_001021_150 Hb_000035_470--Hb_001021_150 Hb_168978_030 Hb_168978_030 Hb_000035_470--Hb_168978_030 Hb_002073_190 Hb_002073_190 Hb_000035_470--Hb_002073_190 Hb_000976_140 Hb_000976_140 Hb_000035_470--Hb_000976_140 Hb_001301_150--Hb_003883_060 Hb_000138_100 Hb_000138_100 Hb_001301_150--Hb_000138_100 Hb_001876_050 Hb_001876_050 Hb_001301_150--Hb_001876_050 Hb_183510_020 Hb_183510_020 Hb_001301_150--Hb_183510_020 Hb_004846_220--Hb_000138_100 Hb_041290_020 Hb_041290_020 Hb_004846_220--Hb_041290_020 Hb_002592_060 Hb_002592_060 Hb_004846_220--Hb_002592_060 Hb_004846_220--Hb_001021_150 Hb_004254_090 Hb_004254_090 Hb_004846_220--Hb_004254_090 Hb_006483_110 Hb_006483_110 Hb_004846_220--Hb_006483_110 Hb_003159_140--Hb_001040_100 Hb_005542_130 Hb_005542_130 Hb_003159_140--Hb_005542_130 Hb_002889_010 Hb_002889_010 Hb_003159_140--Hb_002889_010 Hb_001153_210 Hb_001153_210 Hb_003159_140--Hb_001153_210 Hb_003159_140--Hb_000035_470 Hb_001226_150 Hb_001226_150 Hb_005000_170--Hb_001226_150 Hb_007894_150 Hb_007894_150 Hb_005000_170--Hb_007894_150 Hb_005000_170--Hb_004846_220 Hb_005000_170--Hb_002592_060 Hb_000441_220 Hb_000441_220 Hb_005000_170--Hb_000441_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.60956 4.0983 6.79968 5.40187 4.63902 6.0969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.01919 5.52364 3.89177 7.90511 5.51611

CAGE analysis