Hb_002889_010

Information

Type -
Description -
Location Contig2889: 37349-47025
Sequence    

Annotation

kegg
ID rcu:RCOM_1266830
description ubx domain-containing, putative
nr
ID XP_002530548.1
description ubx domain-containing, putative [Ricinus communis]
swissprot
ID Q9ZW74
description Plant UBX domain-containing protein 11 OS=Arabidopsis thaliana GN=PUX11 PE=1 SV=2
trembl
ID B9SX29
description Ubx domain-containing, putative OS=Ricinus communis GN=RCOM_1266830 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ubiquitin-like superfamily isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30150: 39135-39458 , PASA_asmbl_30151: 39756-42177 , PASA_asmbl_30152: 42278-46888
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002889_010 0.0 - - ubx domain-containing, putative [Ricinus communis]
2 Hb_016777_040 0.0471222948 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]
3 Hb_003861_050 0.0537409948 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
4 Hb_002471_240 0.0540659029 - - PREDICTED: protein POLLEN DEFECTIVE IN GUIDANCE 1 isoform X1 [Jatropha curcas]
5 Hb_001377_310 0.0638738368 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
6 Hb_000816_250 0.064036986 - - PREDICTED: uncharacterized protein LOC105649197 isoform X1 [Jatropha curcas]
7 Hb_000134_270 0.0662091905 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
8 Hb_005779_010 0.0674454223 - - catalytic, putative [Ricinus communis]
9 Hb_000803_270 0.0675050364 - - PREDICTED: nuclear cap-binding protein subunit 1 [Jatropha curcas]
10 Hb_183510_020 0.0676688342 - - coated vesicle membrane protein, putative [Ricinus communis]
11 Hb_000189_600 0.0683731704 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]
12 Hb_003159_140 0.0686874918 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000976_140 0.0695448607 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
14 Hb_005000_170 0.06981731 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
15 Hb_000163_220 0.0708711893 - - hypothetical protein CISIN_1g022301mg [Citrus sinensis]
16 Hb_028960_020 0.0715829279 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
17 Hb_001153_210 0.0718505737 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
18 Hb_000313_220 0.0720356887 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
19 Hb_005867_070 0.0722866878 - - DNA binding protein, putative [Ricinus communis]
20 Hb_004994_010 0.0726950213 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002889_010 Hb_002889_010 Hb_016777_040 Hb_016777_040 Hb_002889_010--Hb_016777_040 Hb_003861_050 Hb_003861_050 Hb_002889_010--Hb_003861_050 Hb_002471_240 Hb_002471_240 Hb_002889_010--Hb_002471_240 Hb_001377_310 Hb_001377_310 Hb_002889_010--Hb_001377_310 Hb_000816_250 Hb_000816_250 Hb_002889_010--Hb_000816_250 Hb_000134_270 Hb_000134_270 Hb_002889_010--Hb_000134_270 Hb_016777_040--Hb_002471_240 Hb_016777_040--Hb_001377_310 Hb_000373_080 Hb_000373_080 Hb_016777_040--Hb_000373_080 Hb_001089_070 Hb_001089_070 Hb_016777_040--Hb_001089_070 Hb_002805_190 Hb_002805_190 Hb_016777_040--Hb_002805_190 Hb_005867_070 Hb_005867_070 Hb_003861_050--Hb_005867_070 Hb_004994_010 Hb_004994_010 Hb_003861_050--Hb_004994_010 Hb_003861_050--Hb_001377_310 Hb_003861_050--Hb_002805_190 Hb_015807_050 Hb_015807_050 Hb_003861_050--Hb_015807_050 Hb_003177_020 Hb_003177_020 Hb_002471_240--Hb_003177_020 Hb_028960_020 Hb_028960_020 Hb_002471_240--Hb_028960_020 Hb_003883_060 Hb_003883_060 Hb_002471_240--Hb_003883_060 Hb_002471_240--Hb_001377_310 Hb_000035_110 Hb_000035_110 Hb_001377_310--Hb_000035_110 Hb_000170_090 Hb_000170_090 Hb_001377_310--Hb_000170_090 Hb_005460_050 Hb_005460_050 Hb_001377_310--Hb_005460_050 Hb_001377_310--Hb_000373_080 Hb_004586_060 Hb_004586_060 Hb_001377_310--Hb_004586_060 Hb_014834_150 Hb_014834_150 Hb_000816_250--Hb_014834_150 Hb_000313_220 Hb_000313_220 Hb_000816_250--Hb_000313_220 Hb_005779_010 Hb_005779_010 Hb_000816_250--Hb_005779_010 Hb_001946_400 Hb_001946_400 Hb_000816_250--Hb_001946_400 Hb_000976_140 Hb_000976_140 Hb_000816_250--Hb_000976_140 Hb_000044_040 Hb_000044_040 Hb_000134_270--Hb_000044_040 Hb_000318_120 Hb_000318_120 Hb_000134_270--Hb_000318_120 Hb_005289_040 Hb_005289_040 Hb_000134_270--Hb_005289_040 Hb_000665_120 Hb_000665_120 Hb_000134_270--Hb_000665_120 Hb_004020_040 Hb_004020_040 Hb_000134_270--Hb_004020_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.5347 13.3963 21.246 15.2196 13.8554 13.9066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2262 11.1557 9.1344 18.2648 14.2738

CAGE analysis