Hb_005779_010

Information

Type -
Description -
Location Contig5779: 13329-17709
Sequence    

Annotation

kegg
ID rcu:RCOM_1609370
description catalytic, putative (EC:4.2.1.17)
nr
ID XP_002511633.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q5XF59
description 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial OS=Arabidopsis thaliana GN=At3g60510 PE=2 SV=1
trembl
ID B9RD44
description Catalytic, putative OS=Ricinus communis GN=RCOM_1609370 PE=4 SV=1
Gene Ontology
ID GO:0003824
description 3-hydroxyisobutyryl- hydrolase-like protein mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49710: 14739-17440
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005779_010 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_004994_010 0.0626880836 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
3 Hb_002445_100 0.0630142704 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 5 isoform X2 [Jatropha curcas]
4 Hb_000163_220 0.0630555432 - - hypothetical protein CISIN_1g022301mg [Citrus sinensis]
5 Hb_000816_250 0.0651245869 - - PREDICTED: uncharacterized protein LOC105649197 isoform X1 [Jatropha curcas]
6 Hb_003861_050 0.0656288966 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
7 Hb_000005_220 0.0672703747 - - DNA ligase 1, partial [Glycine soja]
8 Hb_000260_680 0.0673555516 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
9 Hb_002889_010 0.0674454223 - - ubx domain-containing, putative [Ricinus communis]
10 Hb_005337_090 0.0686673127 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like [Jatropha curcas]
11 Hb_000331_110 0.0692451764 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
12 Hb_001089_110 0.0698488254 - - conserved hypothetical protein [Ricinus communis]
13 Hb_106552_020 0.071346021 - - PREDICTED: serine/arginine-rich splicing factor RS2Z33 isoform X1 [Jatropha curcas]
14 Hb_000339_040 0.0735208025 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
15 Hb_001006_330 0.0737244003 - - sodium/hydrogen exchanger plant, putative [Ricinus communis]
16 Hb_001456_060 0.0741343689 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
17 Hb_001959_110 0.0751702096 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
18 Hb_005289_040 0.0762834689 - - poly(A) polymerase, putative [Ricinus communis]
19 Hb_079526_030 0.0769600446 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
20 Hb_004837_180 0.0786076662 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005779_010 Hb_005779_010 Hb_004994_010 Hb_004994_010 Hb_005779_010--Hb_004994_010 Hb_002445_100 Hb_002445_100 Hb_005779_010--Hb_002445_100 Hb_000163_220 Hb_000163_220 Hb_005779_010--Hb_000163_220 Hb_000816_250 Hb_000816_250 Hb_005779_010--Hb_000816_250 Hb_003861_050 Hb_003861_050 Hb_005779_010--Hb_003861_050 Hb_000005_220 Hb_000005_220 Hb_005779_010--Hb_000005_220 Hb_004994_010--Hb_003861_050 Hb_000390_230 Hb_000390_230 Hb_004994_010--Hb_000390_230 Hb_001456_060 Hb_001456_060 Hb_004994_010--Hb_001456_060 Hb_000359_040 Hb_000359_040 Hb_004994_010--Hb_000359_040 Hb_010407_050 Hb_010407_050 Hb_004994_010--Hb_010407_050 Hb_000339_040 Hb_000339_040 Hb_004994_010--Hb_000339_040 Hb_000416_110 Hb_000416_110 Hb_002445_100--Hb_000416_110 Hb_002445_100--Hb_000005_220 Hb_002445_100--Hb_000339_040 Hb_106552_020 Hb_106552_020 Hb_002445_100--Hb_106552_020 Hb_002889_010 Hb_002889_010 Hb_002445_100--Hb_002889_010 Hb_000163_220--Hb_106552_020 Hb_028872_090 Hb_028872_090 Hb_000163_220--Hb_028872_090 Hb_005588_090 Hb_005588_090 Hb_000163_220--Hb_005588_090 Hb_005289_040 Hb_005289_040 Hb_000163_220--Hb_005289_040 Hb_000163_220--Hb_002889_010 Hb_014834_150 Hb_014834_150 Hb_000816_250--Hb_014834_150 Hb_000313_220 Hb_000313_220 Hb_000816_250--Hb_000313_220 Hb_000816_250--Hb_002889_010 Hb_001946_400 Hb_001946_400 Hb_000816_250--Hb_001946_400 Hb_000976_140 Hb_000976_140 Hb_000816_250--Hb_000976_140 Hb_005867_070 Hb_005867_070 Hb_003861_050--Hb_005867_070 Hb_003861_050--Hb_002889_010 Hb_001377_310 Hb_001377_310 Hb_003861_050--Hb_001377_310 Hb_002805_190 Hb_002805_190 Hb_003861_050--Hb_002805_190 Hb_015807_050 Hb_015807_050 Hb_003861_050--Hb_015807_050 Hb_183612_040 Hb_183612_040 Hb_000005_220--Hb_183612_040 Hb_000035_110 Hb_000035_110 Hb_000005_220--Hb_000035_110 Hb_005337_090 Hb_005337_090 Hb_000005_220--Hb_005337_090 Hb_007441_020 Hb_007441_020 Hb_000005_220--Hb_007441_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.88139 5.60798 7.39673 4.7136 5.37371 5.12833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.74927 5.85844 3.38696 6.48586 4.01391

CAGE analysis