Hb_005337_090

Information

Type -
Description -
Location Contig5337: 160471-174032
Sequence    

Annotation

kegg
ID pop:POPTR_0009s15730g
description POPTRDRAFT_721419; hypothetical protein
nr
ID XP_012066320.1
description PREDICTED: serine/threonine-protein kinase TOUSLED-like [Jatropha curcas]
swissprot
ID Q39238
description Serine/threonine-protein kinase TOUSLED OS=Arabidopsis thaliana GN=TOUSLED PE=1 SV=1
trembl
ID B9HQG6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s15730g PE=4 SV=2
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase tousled

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47491: 162657-164348
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005337_090 0.0 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like [Jatropha curcas]
2 Hb_001089_110 0.0576195926 - - conserved hypothetical protein [Ricinus communis]
3 Hb_027428_010 0.0626408161 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
4 Hb_000308_030 0.0637927854 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
5 Hb_000005_220 0.0640651849 - - DNA ligase 1, partial [Glycine soja]
6 Hb_073973_130 0.0647566726 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
7 Hb_033834_030 0.0655613279 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
8 Hb_002872_030 0.0669280199 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
9 Hb_001143_180 0.0678503253 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
10 Hb_183612_040 0.0683562729 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
11 Hb_005779_010 0.0686673127 - - catalytic, putative [Ricinus communis]
12 Hb_006355_010 0.06880387 - - PREDICTED: protein NLRC3 [Jatropha curcas]
13 Hb_021576_100 0.0691022611 - - Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis]
14 Hb_079526_030 0.0692819347 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
15 Hb_000185_070 0.0703352903 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000351_120 0.0711427068 - - hypothetical protein POPTR_0013s10290g [Populus trichocarpa]
17 Hb_032920_060 0.0722005568 - - PREDICTED: mitotic checkpoint protein BUB3.1 [Jatropha curcas]
18 Hb_008453_140 0.0729459166 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
19 Hb_000107_190 0.0730727349 - - 50S ribosomal protein L20 [Hevea brasiliensis]
20 Hb_000020_150 0.0734932038 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]

Gene co-expression network

sample Hb_005337_090 Hb_005337_090 Hb_001089_110 Hb_001089_110 Hb_005337_090--Hb_001089_110 Hb_027428_010 Hb_027428_010 Hb_005337_090--Hb_027428_010 Hb_000308_030 Hb_000308_030 Hb_005337_090--Hb_000308_030 Hb_000005_220 Hb_000005_220 Hb_005337_090--Hb_000005_220 Hb_073973_130 Hb_073973_130 Hb_005337_090--Hb_073973_130 Hb_033834_030 Hb_033834_030 Hb_005337_090--Hb_033834_030 Hb_079526_030 Hb_079526_030 Hb_001089_110--Hb_079526_030 Hb_001433_070 Hb_001433_070 Hb_001089_110--Hb_001433_070 Hb_183612_040 Hb_183612_040 Hb_001089_110--Hb_183612_040 Hb_000575_040 Hb_000575_040 Hb_001089_110--Hb_000575_040 Hb_000331_110 Hb_000331_110 Hb_001089_110--Hb_000331_110 Hb_002872_030 Hb_002872_030 Hb_027428_010--Hb_002872_030 Hb_027428_010--Hb_073973_130 Hb_006588_070 Hb_006588_070 Hb_027428_010--Hb_006588_070 Hb_000185_070 Hb_000185_070 Hb_027428_010--Hb_000185_070 Hb_010381_090 Hb_010381_090 Hb_027428_010--Hb_010381_090 Hb_000179_030 Hb_000179_030 Hb_000308_030--Hb_000179_030 Hb_000915_020 Hb_000915_020 Hb_000308_030--Hb_000915_020 Hb_008453_140 Hb_008453_140 Hb_000308_030--Hb_008453_140 Hb_021576_100 Hb_021576_100 Hb_000308_030--Hb_021576_100 Hb_001926_030 Hb_001926_030 Hb_000308_030--Hb_001926_030 Hb_000005_220--Hb_183612_040 Hb_000035_110 Hb_000035_110 Hb_000005_220--Hb_000035_110 Hb_007441_020 Hb_007441_020 Hb_000005_220--Hb_007441_020 Hb_002445_100 Hb_002445_100 Hb_000005_220--Hb_002445_100 Hb_005779_010 Hb_005779_010 Hb_000005_220--Hb_005779_010 Hb_000107_190 Hb_000107_190 Hb_073973_130--Hb_000107_190 Hb_073973_130--Hb_002872_030 Hb_022132_050 Hb_022132_050 Hb_073973_130--Hb_022132_050 Hb_000610_010 Hb_000610_010 Hb_073973_130--Hb_000610_010 Hb_001051_080 Hb_001051_080 Hb_033834_030--Hb_001051_080 Hb_001143_180 Hb_001143_180 Hb_033834_030--Hb_001143_180 Hb_002175_030 Hb_002175_030 Hb_033834_030--Hb_002175_030 Hb_000120_430 Hb_000120_430 Hb_033834_030--Hb_000120_430 Hb_000020_150 Hb_000020_150 Hb_033834_030--Hb_000020_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.31916 5.06114 6.61067 4.06148 5.14091 6.80152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.89242 5.33447 3.67634 5.11771 2.70643

CAGE analysis