Hb_000915_020

Information

Type -
Description -
Location Contig915: 18684-25945
Sequence    

Annotation

kegg
ID rcu:RCOM_0017350
description COMPASS component SWD2, putative
nr
ID CBI17381.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q58E77
description WD repeat-containing protein 82-B OS=Xenopus laevis GN=wdr82-b PE=2 SV=1
trembl
ID A0A067LHD4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06526 PE=4 SV=1
Gene Ontology
ID GO:0080008
description wd repeat-containing protein 82-b isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62207: 20188-25724
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000915_020 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_008246_040 0.0556480169 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
3 Hb_001409_020 0.0633095076 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
4 Hb_014497_050 0.0647244851 transcription factor TF Family: bZIP hypothetical protein JCGZ_08021 [Jatropha curcas]
5 Hb_011671_430 0.0667977242 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
6 Hb_000308_030 0.0668936443 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
7 Hb_005993_050 0.069513715 - - Protein AFR, putative [Ricinus communis]
8 Hb_000853_230 0.0703518574 - - syntaxin, putative [Ricinus communis]
9 Hb_000345_380 0.0705617558 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
10 Hb_000020_190 0.0722481579 - - hypothetical protein RCOM_0452240 [Ricinus communis]
11 Hb_001926_030 0.0750001031 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
12 Hb_000030_190 0.0751079472 - - PREDICTED: TATA-box-binding protein-like isoform X1 [Citrus sinensis]
13 Hb_000562_090 0.0759621609 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
14 Hb_000071_030 0.0787872925 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
15 Hb_000789_310 0.0794458358 - - PREDICTED: E3 ubiquitin-protein ligase PRT1 [Jatropha curcas]
16 Hb_003609_030 0.0796827505 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
17 Hb_013399_100 0.0797003928 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000366_120 0.0797441517 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
19 Hb_000038_170 0.0800183781 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
20 Hb_008406_200 0.0801395438 transcription factor TF Family: SNF2 conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000915_020 Hb_000915_020 Hb_008246_040 Hb_008246_040 Hb_000915_020--Hb_008246_040 Hb_001409_020 Hb_001409_020 Hb_000915_020--Hb_001409_020 Hb_014497_050 Hb_014497_050 Hb_000915_020--Hb_014497_050 Hb_011671_430 Hb_011671_430 Hb_000915_020--Hb_011671_430 Hb_000308_030 Hb_000308_030 Hb_000915_020--Hb_000308_030 Hb_005993_050 Hb_005993_050 Hb_000915_020--Hb_005993_050 Hb_000442_150 Hb_000442_150 Hb_008246_040--Hb_000442_150 Hb_000020_190 Hb_000020_190 Hb_008246_040--Hb_000020_190 Hb_008246_040--Hb_014497_050 Hb_002671_140 Hb_002671_140 Hb_008246_040--Hb_002671_140 Hb_000185_070 Hb_000185_070 Hb_008246_040--Hb_000185_070 Hb_010618_010 Hb_010618_010 Hb_001409_020--Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_001409_020--Hb_001248_060 Hb_013399_100 Hb_013399_100 Hb_001409_020--Hb_013399_100 Hb_167498_010 Hb_167498_010 Hb_001409_020--Hb_167498_010 Hb_008406_200 Hb_008406_200 Hb_001409_020--Hb_008406_200 Hb_007576_110 Hb_007576_110 Hb_001409_020--Hb_007576_110 Hb_021409_040 Hb_021409_040 Hb_014497_050--Hb_021409_040 Hb_000366_120 Hb_000366_120 Hb_014497_050--Hb_000366_120 Hb_014497_050--Hb_011671_430 Hb_028285_010 Hb_028285_010 Hb_014497_050--Hb_028285_010 Hb_000030_190 Hb_000030_190 Hb_014497_050--Hb_000030_190 Hb_000038_170 Hb_000038_170 Hb_011671_430--Hb_000038_170 Hb_004577_020 Hb_004577_020 Hb_011671_430--Hb_004577_020 Hb_003058_190 Hb_003058_190 Hb_011671_430--Hb_003058_190 Hb_004355_020 Hb_004355_020 Hb_011671_430--Hb_004355_020 Hb_003158_010 Hb_003158_010 Hb_011671_430--Hb_003158_010 Hb_005337_090 Hb_005337_090 Hb_000308_030--Hb_005337_090 Hb_000179_030 Hb_000179_030 Hb_000308_030--Hb_000179_030 Hb_008453_140 Hb_008453_140 Hb_000308_030--Hb_008453_140 Hb_021576_100 Hb_021576_100 Hb_000308_030--Hb_021576_100 Hb_001926_030 Hb_001926_030 Hb_000308_030--Hb_001926_030 Hb_000029_050 Hb_000029_050 Hb_005993_050--Hb_000029_050 Hb_138596_010 Hb_138596_010 Hb_005993_050--Hb_138596_010 Hb_004055_150 Hb_004055_150 Hb_005993_050--Hb_004055_150 Hb_003609_030 Hb_003609_030 Hb_005993_050--Hb_003609_030 Hb_003680_150 Hb_003680_150 Hb_005993_050--Hb_003680_150 Hb_000853_230 Hb_000853_230 Hb_005993_050--Hb_000853_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.2668 20.097 15.3598 13.359 17.7918 22.2398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.9586 13.4696 18.0234 14.6937 11.2545

CAGE analysis