Hb_000030_190

Information

Type -
Description -
Location Contig30: 153665-157781
Sequence    

Annotation

kegg
ID cit:102614840
description TATA-box-binding protein-like
nr
ID XP_006479090.1
description PREDICTED: TATA-box-binding protein-like isoform X1 [Citrus sinensis]
swissprot
ID P26357
description TATA-box-binding protein OS=Solanum tuberosum GN=TBP PE=2 SV=1
trembl
ID V4T8Q2
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022324mg PE=3 SV=1
Gene Ontology
ID GO:0005634
description tata-box-binding protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31506: 153803-157789 , PASA_asmbl_31508: 156187-156309 , PASA_asmbl_31509: 155952-156090 , PASA_asmbl_31512: 149528-154534 , PASA_asmbl_31513: 153635-157735
cDNA
(Sanger)
(ID:Location)		 011_M05.ab1: 154730-157720 , 026_E06.ab1: 157261-157789

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000030_190 0.0 - - PREDICTED: TATA-box-binding protein-like isoform X1 [Citrus sinensis]
2 Hb_000789_310 0.0518338756 - - PREDICTED: E3 ubiquitin-protein ligase PRT1 [Jatropha curcas]
3 Hb_005291_030 0.0523574004 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
4 Hb_000345_380 0.0540564922 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
5 Hb_001409_020 0.0609680056 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
6 Hb_007576_110 0.0617937803 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
7 Hb_000173_490 0.0634732389 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
8 Hb_000038_170 0.066323243 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
9 Hb_011037_030 0.0697963484 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
10 Hb_004032_150 0.0708648509 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
11 Hb_002303_070 0.0712689789 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
12 Hb_002205_110 0.0713305359 - - conserved hypothetical protein [Ricinus communis]
13 Hb_014497_050 0.0714631578 transcription factor TF Family: bZIP hypothetical protein JCGZ_08021 [Jatropha curcas]
14 Hb_010618_010 0.0721512499 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
15 Hb_001489_150 0.0721602203 - - PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
16 Hb_004881_020 0.0744554361 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
17 Hb_000915_020 0.0751079472 - - unnamed protein product [Vitis vinifera]
18 Hb_000308_030 0.0751279641 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
19 Hb_003025_110 0.0752893256 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
20 Hb_002045_240 0.0753073772 - - 2-methyl-6-phytylbenzoquinone methyltranferase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000030_190 Hb_000030_190 Hb_000789_310 Hb_000789_310 Hb_000030_190--Hb_000789_310 Hb_005291_030 Hb_005291_030 Hb_000030_190--Hb_005291_030 Hb_000345_380 Hb_000345_380 Hb_000030_190--Hb_000345_380 Hb_001409_020 Hb_001409_020 Hb_000030_190--Hb_001409_020 Hb_007576_110 Hb_007576_110 Hb_000030_190--Hb_007576_110 Hb_000173_490 Hb_000173_490 Hb_000030_190--Hb_000173_490 Hb_000789_310--Hb_007576_110 Hb_033642_030 Hb_033642_030 Hb_000789_310--Hb_033642_030 Hb_000462_060 Hb_000462_060 Hb_000789_310--Hb_000462_060 Hb_000789_310--Hb_000345_380 Hb_000789_310--Hb_001409_020 Hb_001638_170 Hb_001638_170 Hb_005291_030--Hb_001638_170 Hb_001489_150 Hb_001489_150 Hb_005291_030--Hb_001489_150 Hb_002271_020 Hb_002271_020 Hb_005291_030--Hb_002271_020 Hb_002303_070 Hb_002303_070 Hb_005291_030--Hb_002303_070 Hb_002473_130 Hb_002473_130 Hb_005291_030--Hb_002473_130 Hb_105328_020 Hb_105328_020 Hb_000345_380--Hb_105328_020 Hb_011037_030 Hb_011037_030 Hb_000345_380--Hb_011037_030 Hb_008406_200 Hb_008406_200 Hb_000345_380--Hb_008406_200 Hb_000345_380--Hb_001409_020 Hb_010618_010 Hb_010618_010 Hb_001409_020--Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_001409_020--Hb_001248_060 Hb_013399_100 Hb_013399_100 Hb_001409_020--Hb_013399_100 Hb_167498_010 Hb_167498_010 Hb_001409_020--Hb_167498_010 Hb_001409_020--Hb_008406_200 Hb_001409_020--Hb_007576_110 Hb_000366_120 Hb_000366_120 Hb_007576_110--Hb_000366_120 Hb_014361_070 Hb_014361_070 Hb_007576_110--Hb_014361_070 Hb_000190_120 Hb_000190_120 Hb_007576_110--Hb_000190_120 Hb_002375_010 Hb_002375_010 Hb_007576_110--Hb_002375_010 Hb_031284_040 Hb_031284_040 Hb_000173_490--Hb_031284_040 Hb_000173_490--Hb_001409_020 Hb_000173_490--Hb_010618_010 Hb_000173_490--Hb_001248_060 Hb_001635_090 Hb_001635_090 Hb_000173_490--Hb_001635_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.8033 33.2027 25.189 29.3483 33.0259 47.3556
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.0131 31.2002 28.6635 27.0118 21.2515

CAGE analysis