Hb_000462_060

Information

Type transcription factor
Description TF Family: PHD
Location Contig462: 92906-107162
Sequence    

Annotation

kegg
ID tcc:TCM_022344
description Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain isoform 1
nr
ID XP_012082509.1
description PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
swissprot
ID F4IXE7
description Increased DNA methylation 1 OS=Arabidopsis thaliana GN=IDM1 PE=1 SV=1
trembl
ID A0A067KBQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16603 PE=4 SV=1
Gene Ontology
ID GO:0005515
description acyl- n-acyltransferase with ring fyve phd-type zinc finger domain isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43776: 93467-107105 , PASA_asmbl_43777: 105689-106196 , PASA_asmbl_43778: 94080-107105
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000462_060 0.0 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
2 Hb_002732_040 0.0533741153 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]
3 Hb_000343_250 0.0537292213 - - PREDICTED: protein CASC3 [Jatropha curcas]
4 Hb_002272_130 0.0546644661 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
5 Hb_000789_310 0.0565130537 - - PREDICTED: E3 ubiquitin-protein ligase PRT1 [Jatropha curcas]
6 Hb_000617_180 0.0565573579 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
7 Hb_001047_220 0.0575834105 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
8 Hb_020378_030 0.0624218855 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
9 Hb_007576_110 0.0626727561 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
10 Hb_002684_040 0.0633194412 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
11 Hb_000347_070 0.066772691 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002375_010 0.067880111 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
13 Hb_000975_040 0.0679665944 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
14 Hb_003861_050 0.0681992285 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
15 Hb_014361_070 0.0696726442 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
16 Hb_000345_380 0.0697614187 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
17 Hb_001369_130 0.0698572888 - - PREDICTED: autophagy-related protein 3 isoform X1 [Jatropha curcas]
18 Hb_000207_180 0.0701970844 - - PREDICTED: calponin homology domain-containing protein DDB_G0272472 [Jatropha curcas]
19 Hb_002805_190 0.0708647843 - - spliceosome associated protein, putative [Ricinus communis]
20 Hb_000958_140 0.0709245921 - - PREDICTED: uncharacterized protein LOC105628714 [Jatropha curcas]

Gene co-expression network

sample Hb_000462_060 Hb_000462_060 Hb_002732_040 Hb_002732_040 Hb_000462_060--Hb_002732_040 Hb_000343_250 Hb_000343_250 Hb_000462_060--Hb_000343_250 Hb_002272_130 Hb_002272_130 Hb_000462_060--Hb_002272_130 Hb_000789_310 Hb_000789_310 Hb_000462_060--Hb_000789_310 Hb_000617_180 Hb_000617_180 Hb_000462_060--Hb_000617_180 Hb_001047_220 Hb_001047_220 Hb_000462_060--Hb_001047_220 Hb_002732_040--Hb_000343_250 Hb_007747_040 Hb_007747_040 Hb_002732_040--Hb_007747_040 Hb_020378_030 Hb_020378_030 Hb_002732_040--Hb_020378_030 Hb_000866_460 Hb_000866_460 Hb_002732_040--Hb_000866_460 Hb_000327_270 Hb_000327_270 Hb_002732_040--Hb_000327_270 Hb_000200_380 Hb_000200_380 Hb_000343_250--Hb_000200_380 Hb_008406_200 Hb_008406_200 Hb_000343_250--Hb_008406_200 Hb_000346_060 Hb_000346_060 Hb_000343_250--Hb_000346_060 Hb_004963_030 Hb_004963_030 Hb_000343_250--Hb_004963_030 Hb_033642_030 Hb_033642_030 Hb_002272_130--Hb_033642_030 Hb_000035_110 Hb_000035_110 Hb_002272_130--Hb_000035_110 Hb_002272_130--Hb_000200_380 Hb_002398_030 Hb_002398_030 Hb_002272_130--Hb_002398_030 Hb_032986_010 Hb_032986_010 Hb_002272_130--Hb_032986_010 Hb_007576_110 Hb_007576_110 Hb_000789_310--Hb_007576_110 Hb_000030_190 Hb_000030_190 Hb_000789_310--Hb_000030_190 Hb_000789_310--Hb_033642_030 Hb_000345_380 Hb_000345_380 Hb_000789_310--Hb_000345_380 Hb_001409_020 Hb_001409_020 Hb_000789_310--Hb_001409_020 Hb_000347_070 Hb_000347_070 Hb_000617_180--Hb_000347_070 Hb_002375_010 Hb_002375_010 Hb_000617_180--Hb_002375_010 Hb_004619_030 Hb_004619_030 Hb_000617_180--Hb_004619_030 Hb_168978_030 Hb_168978_030 Hb_000617_180--Hb_168978_030 Hb_000008_290 Hb_000008_290 Hb_000617_180--Hb_000008_290 Hb_000958_140 Hb_000958_140 Hb_001047_220--Hb_000958_140 Hb_034432_030 Hb_034432_030 Hb_001047_220--Hb_034432_030 Hb_001379_110 Hb_001379_110 Hb_001047_220--Hb_001379_110 Hb_138596_010 Hb_138596_010 Hb_001047_220--Hb_138596_010 Hb_000975_040 Hb_000975_040 Hb_001047_220--Hb_000975_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.1286 19.5388 20.4035 16.8383 24.3282 25.7143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.5777 12.1314 19.7452 19.8671 18.7023

CAGE analysis