Hb_000866_460

Information

Type -
Description -
Location Contig866: 319203-323719
Sequence    

Annotation

kegg
ID rcu:RCOM_1614630
description acetyl-coenzyme A carboxylase carboxyl transferase alpha, putative (EC:6.4.1.2)
nr
ID XP_012083430.1
description PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9LD43
description Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=CAC3 PE=1 SV=1
trembl
ID A0A067K8Q8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14426 PE=3 SV=1
Gene Ontology
ID GO:0009317
description acetyl-coenzyme a carboxylase carboxyl transferase subunit chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60996: 319206-323659
cDNA
(Sanger)
(ID:Location)		 022_G21.ab1: 322518-323659

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_460 0.0 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like [Jatropha curcas]
2 Hb_001322_130 0.0533215794 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
3 Hb_002205_250 0.0550337989 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
4 Hb_002732_040 0.0559744956 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]
5 Hb_000243_210 0.058064968 - - protein with unknown function [Ricinus communis]
6 Hb_002253_080 0.0588162049 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
7 Hb_001279_120 0.0633058956 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
8 Hb_002267_140 0.0641614691 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
9 Hb_001195_530 0.064245255 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000861_080 0.0645631744 - - PREDICTED: protein ELC-like [Jatropha curcas]
11 Hb_000329_370 0.0652752007 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
12 Hb_012194_030 0.0657129008 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
13 Hb_138596_010 0.0675026556 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
14 Hb_002843_120 0.0676680784 - - PREDICTED: uncharacterized protein LOC105645113 isoform X1 [Jatropha curcas]
15 Hb_031042_050 0.0704212072 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
16 Hb_000915_180 0.0715633705 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretschneideri]
17 Hb_000343_250 0.0724753352 - - PREDICTED: protein CASC3 [Jatropha curcas]
18 Hb_001318_070 0.0728699766 transcription factor TF Family: SBP conserved hypothetical protein [Ricinus communis]
19 Hb_020831_030 0.0729751066 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000614_210 0.0730471548 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000866_460 Hb_000866_460 Hb_001322_130 Hb_001322_130 Hb_000866_460--Hb_001322_130 Hb_002205_250 Hb_002205_250 Hb_000866_460--Hb_002205_250 Hb_002732_040 Hb_002732_040 Hb_000866_460--Hb_002732_040 Hb_000243_210 Hb_000243_210 Hb_000866_460--Hb_000243_210 Hb_002253_080 Hb_002253_080 Hb_000866_460--Hb_002253_080 Hb_001279_120 Hb_001279_120 Hb_000866_460--Hb_001279_120 Hb_001322_130--Hb_002253_080 Hb_031042_050 Hb_031042_050 Hb_001322_130--Hb_031042_050 Hb_002267_140 Hb_002267_140 Hb_001322_130--Hb_002267_140 Hb_001322_130--Hb_000243_210 Hb_019430_020 Hb_019430_020 Hb_001322_130--Hb_019430_020 Hb_105105_010 Hb_105105_010 Hb_002205_250--Hb_105105_010 Hb_003835_070 Hb_003835_070 Hb_002205_250--Hb_003835_070 Hb_000614_210 Hb_000614_210 Hb_002205_250--Hb_000614_210 Hb_001814_030 Hb_001814_030 Hb_002205_250--Hb_001814_030 Hb_001716_020 Hb_001716_020 Hb_002205_250--Hb_001716_020 Hb_002205_250--Hb_000243_210 Hb_000343_250 Hb_000343_250 Hb_002732_040--Hb_000343_250 Hb_007747_040 Hb_007747_040 Hb_002732_040--Hb_007747_040 Hb_000462_060 Hb_000462_060 Hb_002732_040--Hb_000462_060 Hb_020378_030 Hb_020378_030 Hb_002732_040--Hb_020378_030 Hb_000327_270 Hb_000327_270 Hb_002732_040--Hb_000327_270 Hb_001318_070 Hb_001318_070 Hb_000243_210--Hb_001318_070 Hb_000099_040 Hb_000099_040 Hb_000243_210--Hb_000099_040 Hb_000174_060 Hb_000174_060 Hb_000243_210--Hb_000174_060 Hb_000671_070 Hb_000671_070 Hb_000243_210--Hb_000671_070 Hb_000879_040 Hb_000879_040 Hb_000243_210--Hb_000879_040 Hb_008253_030 Hb_008253_030 Hb_002253_080--Hb_008253_030 Hb_001767_140 Hb_001767_140 Hb_002253_080--Hb_001767_140 Hb_002253_080--Hb_031042_050 Hb_002253_080--Hb_002267_140 Hb_002615_090 Hb_002615_090 Hb_002253_080--Hb_002615_090 Hb_001545_150 Hb_001545_150 Hb_001279_120--Hb_001545_150 Hb_001279_120--Hb_000099_040 Hb_002329_020 Hb_002329_020 Hb_001279_120--Hb_002329_020 Hb_009150_020 Hb_009150_020 Hb_001279_120--Hb_009150_020 Hb_002085_030 Hb_002085_030 Hb_001279_120--Hb_002085_030 Hb_012194_030 Hb_012194_030 Hb_001279_120--Hb_012194_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.6667 37.0397 25.3117 22.2973 29.2133 23.8808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.4213 16.3357 26.7474 19.9099 27.6164

CAGE analysis