Hb_012194_030

Information

Type -
Description -
Location Contig12194: 31451-40271
Sequence    

Annotation

kegg
ID tcc:TCM_043919
description Single-stranded nucleic acid binding R3H protein isoform 1
nr
ID XP_012074666.1
description PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
swissprot
ID Q80TM6
description R3H domain-containing protein 2 OS=Mus musculus GN=R3hdm2 PE=1 SV=2
trembl
ID A0A067KI62
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10418 PE=4 SV=1
Gene Ontology
ID GO:0003676
description camp-regulated phosphoprotein 21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06644: 31524-40170 , PASA_asmbl_06645: 39313-39751 , PASA_asmbl_06648: 31913-39152
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012194_030 0.0 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
2 Hb_000329_370 0.0472630199 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
3 Hb_162275_050 0.0475172942 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
4 Hb_002085_030 0.0485850195 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
5 Hb_003835_070 0.0544274597 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
6 Hb_010712_050 0.0570672405 - - PREDICTED: protein ELC-like [Jatropha curcas]
7 Hb_012779_090 0.0601586213 - - PREDICTED: lipase member N [Jatropha curcas]
8 Hb_002205_250 0.0618543925 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
9 Hb_001279_120 0.0620223048 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
10 Hb_001767_140 0.0622536725 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
11 Hb_140049_040 0.0624907046 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
12 Hb_000172_430 0.0634459646 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003470_080 0.0638200517 transcription factor TF Family: SNF2 PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Jatropha curcas]
14 Hb_000614_210 0.0651278813 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
15 Hb_003866_080 0.0652389097 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
16 Hb_003929_280 0.0653383078 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
17 Hb_003206_130 0.0654254912 - - PREDICTED: protein NRDE2 homolog [Jatropha curcas]
18 Hb_000866_460 0.0657129008 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like [Jatropha curcas]
19 Hb_001430_080 0.0660247763 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
20 Hb_000441_120 0.0660986139 - - PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012194_030 Hb_012194_030 Hb_000329_370 Hb_000329_370 Hb_012194_030--Hb_000329_370 Hb_162275_050 Hb_162275_050 Hb_012194_030--Hb_162275_050 Hb_002085_030 Hb_002085_030 Hb_012194_030--Hb_002085_030 Hb_003835_070 Hb_003835_070 Hb_012194_030--Hb_003835_070 Hb_010712_050 Hb_010712_050 Hb_012194_030--Hb_010712_050 Hb_012779_090 Hb_012779_090 Hb_012194_030--Hb_012779_090 Hb_005489_020 Hb_005489_020 Hb_000329_370--Hb_005489_020 Hb_000329_370--Hb_010712_050 Hb_011537_050 Hb_011537_050 Hb_000329_370--Hb_011537_050 Hb_000329_370--Hb_002085_030 Hb_000441_120 Hb_000441_120 Hb_000329_370--Hb_000441_120 Hb_162275_050--Hb_012779_090 Hb_000614_210 Hb_000614_210 Hb_162275_050--Hb_000614_210 Hb_001410_020 Hb_001410_020 Hb_162275_050--Hb_001410_020 Hb_162275_050--Hb_003835_070 Hb_003464_090 Hb_003464_090 Hb_162275_050--Hb_003464_090 Hb_012305_030 Hb_012305_030 Hb_002085_030--Hb_012305_030 Hb_003866_080 Hb_003866_080 Hb_002085_030--Hb_003866_080 Hb_001767_140 Hb_001767_140 Hb_002085_030--Hb_001767_140 Hb_001279_120 Hb_001279_120 Hb_002085_030--Hb_001279_120 Hb_002205_250 Hb_002205_250 Hb_003835_070--Hb_002205_250 Hb_002217_170 Hb_002217_170 Hb_003835_070--Hb_002217_170 Hb_003835_070--Hb_000614_210 Hb_105105_010 Hb_105105_010 Hb_003835_070--Hb_105105_010 Hb_011618_090 Hb_011618_090 Hb_003835_070--Hb_011618_090 Hb_003030_060 Hb_003030_060 Hb_010712_050--Hb_003030_060 Hb_002234_090 Hb_002234_090 Hb_010712_050--Hb_002234_090 Hb_001614_060 Hb_001614_060 Hb_010712_050--Hb_001614_060 Hb_010712_050--Hb_003835_070 Hb_002798_070 Hb_002798_070 Hb_012779_090--Hb_002798_070 Hb_000243_250 Hb_000243_250 Hb_012779_090--Hb_000243_250 Hb_000395_130 Hb_000395_130 Hb_012779_090--Hb_000395_130 Hb_012779_090--Hb_001410_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7485 29.4892 19.0832 12.8175 19.2493 18.2419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0321 15.8228 16.8084 18.8082 20.0811

CAGE analysis