Hb_002217_170

Information

Type -
Description -
Location Contig2217: 170611-183923
Sequence    

Annotation

kegg
ID rcu:RCOM_1002390
description ubiquitin-protein ligase, putative
nr
ID XP_012487540.1
description PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
swissprot
ID Q8RWB8
description E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1
trembl
ID A0A067JVG9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19051 PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase upl6-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22908: 170731-183921
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_170 0.0 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
2 Hb_003835_070 0.0480327013 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
3 Hb_001195_530 0.0586727234 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000317_370 0.0607086019 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]
5 Hb_003464_090 0.0626448982 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
6 Hb_105105_010 0.0672264824 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
7 Hb_000614_210 0.067588912 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
8 Hb_002234_090 0.068056264 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
9 Hb_162275_050 0.0680984336 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
10 Hb_000976_210 0.0690812015 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
11 Hb_033772_030 0.0701097131 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
12 Hb_001408_140 0.0706369834 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
13 Hb_020831_030 0.0708847427 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002205_250 0.0711524856 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
15 Hb_007163_120 0.0717312736 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
16 Hb_003544_060 0.071909466 - - hypothetical protein JCGZ_22100 [Jatropha curcas]
17 Hb_000402_230 0.0719762876 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
18 Hb_001410_020 0.073226028 - - cdk8, putative [Ricinus communis]
19 Hb_004553_030 0.0732979518 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
20 Hb_000313_120 0.0741096049 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]

Gene co-expression network

sample Hb_002217_170 Hb_002217_170 Hb_003835_070 Hb_003835_070 Hb_002217_170--Hb_003835_070 Hb_001195_530 Hb_001195_530 Hb_002217_170--Hb_001195_530 Hb_000317_370 Hb_000317_370 Hb_002217_170--Hb_000317_370 Hb_003464_090 Hb_003464_090 Hb_002217_170--Hb_003464_090 Hb_105105_010 Hb_105105_010 Hb_002217_170--Hb_105105_010 Hb_000614_210 Hb_000614_210 Hb_002217_170--Hb_000614_210 Hb_002205_250 Hb_002205_250 Hb_003835_070--Hb_002205_250 Hb_003835_070--Hb_000614_210 Hb_003835_070--Hb_105105_010 Hb_012194_030 Hb_012194_030 Hb_003835_070--Hb_012194_030 Hb_011618_090 Hb_011618_090 Hb_003835_070--Hb_011618_090 Hb_020831_030 Hb_020831_030 Hb_001195_530--Hb_020831_030 Hb_001195_530--Hb_105105_010 Hb_003640_040 Hb_003640_040 Hb_001195_530--Hb_003640_040 Hb_001408_140 Hb_001408_140 Hb_001195_530--Hb_001408_140 Hb_002056_090 Hb_002056_090 Hb_001195_530--Hb_002056_090 Hb_001195_530--Hb_002205_250 Hb_000317_370--Hb_011618_090 Hb_000025_280 Hb_000025_280 Hb_000317_370--Hb_000025_280 Hb_000317_370--Hb_003835_070 Hb_000976_210 Hb_000976_210 Hb_000317_370--Hb_000976_210 Hb_000258_160 Hb_000258_160 Hb_000317_370--Hb_000258_160 Hb_007163_120 Hb_007163_120 Hb_003464_090--Hb_007163_120 Hb_003849_110 Hb_003849_110 Hb_003464_090--Hb_003849_110 Hb_001359_050 Hb_001359_050 Hb_003464_090--Hb_001359_050 Hb_003464_090--Hb_001408_140 Hb_005653_090 Hb_005653_090 Hb_003464_090--Hb_005653_090 Hb_007765_110 Hb_007765_110 Hb_003464_090--Hb_007765_110 Hb_105105_010--Hb_002205_250 Hb_105105_010--Hb_001408_140 Hb_001716_020 Hb_001716_020 Hb_105105_010--Hb_001716_020 Hb_002492_010 Hb_002492_010 Hb_105105_010--Hb_002492_010 Hb_159558_010 Hb_159558_010 Hb_000614_210--Hb_159558_010 Hb_000614_210--Hb_002205_250 Hb_001814_030 Hb_001814_030 Hb_000614_210--Hb_001814_030 Hb_162275_050 Hb_162275_050 Hb_000614_210--Hb_162275_050 Hb_000614_210--Hb_105105_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.3843 29.6758 18.0507 17.6274 18.9755 14.5982
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.4279 13.7728 21.1081 21.0993 13.7978

CAGE analysis