Hb_000258_160

Information

Type -
Description -
Location Contig258: 139924-144248
Sequence    

Annotation

kegg
ID rcu:RCOM_0836380
description hypothetical protein
nr
ID XP_002522432.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q5XVF0
description TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Arabidopsis thaliana GN=MEE12 PE=1 SV=1
trembl
ID B9S8W3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0836380 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26809: 139978-143873 , PASA_asmbl_26811: 142994-143873
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003494_020 0.0552235455 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
3 Hb_000041_110 0.0587294522 - - PREDICTED: WW domain-binding protein 11 isoform X1 [Jatropha curcas]
4 Hb_019863_070 0.0607726067 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
5 Hb_000340_530 0.0633550751 - - hypothetical protein VITISV_016664 [Vitis vinifera]
6 Hb_004079_060 0.0639556279 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
7 Hb_162275_050 0.0664848792 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
8 Hb_003464_090 0.0681076003 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
9 Hb_001417_030 0.0682602641 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
10 Hb_002818_030 0.0686931746 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
11 Hb_005730_090 0.0689551465 - - PREDICTED: uncharacterized protein LOC105631484 [Jatropha curcas]
12 Hb_000317_370 0.0696012743 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]
13 Hb_000792_010 0.069739297 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
14 Hb_000111_290 0.0703860334 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
15 Hb_001408_140 0.0704530638 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
16 Hb_003206_130 0.070695225 - - PREDICTED: protein NRDE2 homolog [Jatropha curcas]
17 Hb_011063_050 0.0707274677 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
18 Hb_000614_210 0.0710396396 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
19 Hb_000174_270 0.0712544175 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
20 Hb_000329_710 0.0725146372 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000258_160 Hb_000258_160 Hb_003494_020 Hb_003494_020 Hb_000258_160--Hb_003494_020 Hb_000041_110 Hb_000041_110 Hb_000258_160--Hb_000041_110 Hb_019863_070 Hb_019863_070 Hb_000258_160--Hb_019863_070 Hb_000340_530 Hb_000340_530 Hb_000258_160--Hb_000340_530 Hb_004079_060 Hb_004079_060 Hb_000258_160--Hb_004079_060 Hb_162275_050 Hb_162275_050 Hb_000258_160--Hb_162275_050 Hb_000174_270 Hb_000174_270 Hb_003494_020--Hb_000174_270 Hb_002234_170 Hb_002234_170 Hb_003494_020--Hb_002234_170 Hb_000028_130 Hb_000028_130 Hb_003494_020--Hb_000028_130 Hb_062226_070 Hb_062226_070 Hb_003494_020--Hb_062226_070 Hb_002818_030 Hb_002818_030 Hb_003494_020--Hb_002818_030 Hb_002518_260 Hb_002518_260 Hb_000041_110--Hb_002518_260 Hb_009486_140 Hb_009486_140 Hb_000041_110--Hb_009486_140 Hb_000297_010 Hb_000297_010 Hb_000041_110--Hb_000297_010 Hb_000792_010 Hb_000792_010 Hb_000041_110--Hb_000792_010 Hb_000329_710 Hb_000329_710 Hb_000041_110--Hb_000329_710 Hb_019863_070--Hb_002818_030 Hb_003849_110 Hb_003849_110 Hb_019863_070--Hb_003849_110 Hb_000868_090 Hb_000868_090 Hb_019863_070--Hb_000868_090 Hb_005054_110 Hb_005054_110 Hb_019863_070--Hb_005054_110 Hb_015807_150 Hb_015807_150 Hb_019863_070--Hb_015807_150 Hb_002989_020 Hb_002989_020 Hb_000340_530--Hb_002989_020 Hb_011063_050 Hb_011063_050 Hb_000340_530--Hb_011063_050 Hb_093458_040 Hb_093458_040 Hb_000340_530--Hb_093458_040 Hb_001679_050 Hb_001679_050 Hb_000340_530--Hb_001679_050 Hb_000116_450 Hb_000116_450 Hb_000340_530--Hb_000116_450 Hb_004109_080 Hb_004109_080 Hb_000340_530--Hb_004109_080 Hb_001999_290 Hb_001999_290 Hb_004079_060--Hb_001999_290 Hb_004079_060--Hb_062226_070 Hb_000473_110 Hb_000473_110 Hb_004079_060--Hb_000473_110 Hb_004079_060--Hb_000174_270 Hb_004079_060--Hb_003494_020 Hb_012779_090 Hb_012779_090 Hb_162275_050--Hb_012779_090 Hb_012194_030 Hb_012194_030 Hb_162275_050--Hb_012194_030 Hb_000614_210 Hb_000614_210 Hb_162275_050--Hb_000614_210 Hb_001410_020 Hb_001410_020 Hb_162275_050--Hb_001410_020 Hb_003835_070 Hb_003835_070 Hb_162275_050--Hb_003835_070 Hb_003464_090 Hb_003464_090 Hb_162275_050--Hb_003464_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.68639 8.55068 4.68097 6.03244 7.18423 4.99888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.76285 6.84737 7.52541 7.22195 7.17726

CAGE analysis