Hb_000041_110

Information

Type -
Description -
Location Contig41: 168849-174608
Sequence    

Annotation

kegg
ID rcu:RCOM_1095580
description DNA binding protein, putative
nr
ID XP_012081352.1
description PREDICTED: WW domain-binding protein 11 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LA45
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09575 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40484: 169644-214181 , PASA_asmbl_40488: 173499-173883 , PASA_asmbl_40489: 168701-203015 , PASA_asmbl_40490: 169644-174329
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000041_110 0.0 - - PREDICTED: WW domain-binding protein 11 isoform X1 [Jatropha curcas]
2 Hb_002518_260 0.0384689677 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
3 Hb_009486_140 0.0568811978 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
4 Hb_000258_160 0.0587294522 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000297_010 0.060843096 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
6 Hb_000792_010 0.0612432997 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
7 Hb_000329_710 0.0623414862 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
8 Hb_011386_010 0.0650529225 - - mitochondrial carrier protein, putative [Ricinus communis]
9 Hb_000111_290 0.0686819523 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
10 Hb_167498_010 0.0696365058 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
11 Hb_015934_040 0.0703407956 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
12 Hb_004724_150 0.0704966002 - - expressed protein, putative [Ricinus communis]
13 Hb_001257_010 0.0706217657 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]
14 Hb_000556_160 0.0717911761 - - PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Jatropha curcas]
15 Hb_000028_480 0.0729430967 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
16 Hb_001417_030 0.0729922601 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
17 Hb_019863_070 0.0730394284 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
18 Hb_004800_080 0.0732599814 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
19 Hb_005054_110 0.073362323 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
20 Hb_004254_090 0.0735173676 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]

Gene co-expression network

sample Hb_000041_110 Hb_000041_110 Hb_002518_260 Hb_002518_260 Hb_000041_110--Hb_002518_260 Hb_009486_140 Hb_009486_140 Hb_000041_110--Hb_009486_140 Hb_000258_160 Hb_000258_160 Hb_000041_110--Hb_000258_160 Hb_000297_010 Hb_000297_010 Hb_000041_110--Hb_000297_010 Hb_000792_010 Hb_000792_010 Hb_000041_110--Hb_000792_010 Hb_000329_710 Hb_000329_710 Hb_000041_110--Hb_000329_710 Hb_002518_260--Hb_000792_010 Hb_000028_480 Hb_000028_480 Hb_002518_260--Hb_000028_480 Hb_002518_260--Hb_009486_140 Hb_011386_010 Hb_011386_010 Hb_002518_260--Hb_011386_010 Hb_002518_260--Hb_000329_710 Hb_009486_140--Hb_000329_710 Hb_009486_140--Hb_011386_010 Hb_156279_020 Hb_156279_020 Hb_009486_140--Hb_156279_020 Hb_005054_110 Hb_005054_110 Hb_009486_140--Hb_005054_110 Hb_003494_020 Hb_003494_020 Hb_000258_160--Hb_003494_020 Hb_019863_070 Hb_019863_070 Hb_000258_160--Hb_019863_070 Hb_000340_530 Hb_000340_530 Hb_000258_160--Hb_000340_530 Hb_004079_060 Hb_004079_060 Hb_000258_160--Hb_004079_060 Hb_162275_050 Hb_162275_050 Hb_000258_160--Hb_162275_050 Hb_000185_030 Hb_000185_030 Hb_000297_010--Hb_000185_030 Hb_004724_150 Hb_004724_150 Hb_000297_010--Hb_004724_150 Hb_015934_040 Hb_015934_040 Hb_000297_010--Hb_015934_040 Hb_000245_040 Hb_000245_040 Hb_000297_010--Hb_000245_040 Hb_000041_100 Hb_000041_100 Hb_000297_010--Hb_000041_100 Hb_000840_250 Hb_000840_250 Hb_000297_010--Hb_000840_250 Hb_000792_010--Hb_000329_710 Hb_000792_010--Hb_000028_480 Hb_003411_040 Hb_003411_040 Hb_000792_010--Hb_003411_040 Hb_001004_060 Hb_001004_060 Hb_000792_010--Hb_001004_060 Hb_000792_010--Hb_011386_010 Hb_000329_710--Hb_011386_010 Hb_000329_710--Hb_001004_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.62432 12.2993 7.07541 8.8527 11.6126 9.42495
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2644 12.685 14.9243 13.4169 11.7371

CAGE analysis