Hb_003411_040

Information

Type -
Description -
Location Contig3411: 84254-89320
Sequence    

Annotation

kegg
ID tcc:TCM_019468
description Rad23 UV excision repair protein family isoform 1
nr
ID CDP19777.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q84L31
description Ubiquitin receptor RAD23c OS=Arabidopsis thaliana GN=RAD23C PE=1 SV=2
trembl
ID A0A068VGR8
description Coffea canephora DH200=94 genomic scaffold, scaffold_673 OS=Coffea canephora GN=GSCOC_T00013525001 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna repair protein rad23-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35653: 86622-89253 , PASA_asmbl_35654: 88254-88472 , PASA_asmbl_35655: 88498-88658
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003411_040 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_001814_030 0.0569680972 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
3 Hb_000792_010 0.0573021213 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
4 Hb_000592_030 0.0591561217 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
5 Hb_004567_090 0.0603635359 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
6 Hb_000111_290 0.0607470266 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
7 Hb_001417_030 0.0620738108 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
8 Hb_000494_070 0.0636418012 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
9 Hb_003913_070 0.0640729129 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
10 Hb_000406_200 0.0650942614 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
11 Hb_009296_040 0.0729659779 - - hypothetical protein L484_007435 [Morus notabilis]
12 Hb_004586_220 0.0732300404 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
13 Hb_001999_310 0.0733413024 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
14 Hb_009270_020 0.0740457793 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
15 Hb_004109_080 0.0743173825 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
16 Hb_000613_050 0.0744317327 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
17 Hb_000340_530 0.0746680442 - - hypothetical protein VITISV_016664 [Vitis vinifera]
18 Hb_000138_100 0.0747482962 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
19 Hb_000083_120 0.075332668 - - transcription factor, putative [Ricinus communis]
20 Hb_000006_040 0.0754753695 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003411_040 Hb_003411_040 Hb_001814_030 Hb_001814_030 Hb_003411_040--Hb_001814_030 Hb_000792_010 Hb_000792_010 Hb_003411_040--Hb_000792_010 Hb_000592_030 Hb_000592_030 Hb_003411_040--Hb_000592_030 Hb_004567_090 Hb_004567_090 Hb_003411_040--Hb_004567_090 Hb_000111_290 Hb_000111_290 Hb_003411_040--Hb_000111_290 Hb_001417_030 Hb_001417_030 Hb_003411_040--Hb_001417_030 Hb_004586_220 Hb_004586_220 Hb_001814_030--Hb_004586_220 Hb_002205_250 Hb_002205_250 Hb_001814_030--Hb_002205_250 Hb_000614_210 Hb_000614_210 Hb_001814_030--Hb_000614_210 Hb_012395_140 Hb_012395_140 Hb_001814_030--Hb_012395_140 Hb_159558_010 Hb_159558_010 Hb_001814_030--Hb_159558_010 Hb_020378_030 Hb_020378_030 Hb_001814_030--Hb_020378_030 Hb_000329_710 Hb_000329_710 Hb_000792_010--Hb_000329_710 Hb_002518_260 Hb_002518_260 Hb_000792_010--Hb_002518_260 Hb_000028_480 Hb_000028_480 Hb_000792_010--Hb_000028_480 Hb_001004_060 Hb_001004_060 Hb_000792_010--Hb_001004_060 Hb_011386_010 Hb_011386_010 Hb_000792_010--Hb_011386_010 Hb_000613_050 Hb_000613_050 Hb_000592_030--Hb_000613_050 Hb_000592_030--Hb_020378_030 Hb_002815_030 Hb_002815_030 Hb_000592_030--Hb_002815_030 Hb_000537_050 Hb_000537_050 Hb_000592_030--Hb_000537_050 Hb_001343_040 Hb_001343_040 Hb_000592_030--Hb_001343_040 Hb_001473_180 Hb_001473_180 Hb_000592_030--Hb_001473_180 Hb_004109_080 Hb_004109_080 Hb_004567_090--Hb_004109_080 Hb_002110_190 Hb_002110_190 Hb_004567_090--Hb_002110_190 Hb_007479_040 Hb_007479_040 Hb_004567_090--Hb_007479_040 Hb_012498_010 Hb_012498_010 Hb_004567_090--Hb_012498_010 Hb_054865_150 Hb_054865_150 Hb_004567_090--Hb_054865_150 Hb_000111_290--Hb_001417_030 Hb_004324_130 Hb_004324_130 Hb_000111_290--Hb_004324_130 Hb_002456_010 Hb_002456_010 Hb_000111_290--Hb_002456_010 Hb_003913_070 Hb_003913_070 Hb_000111_290--Hb_003913_070 Hb_000614_240 Hb_000614_240 Hb_000111_290--Hb_000614_240 Hb_001999_310 Hb_001999_310 Hb_000111_290--Hb_001999_310 Hb_001417_030--Hb_003913_070 Hb_001417_030--Hb_000792_010 Hb_001417_030--Hb_002518_260 Hb_001417_030--Hb_000614_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4057 20.6887 15.8297 18.5044 21.2858 24.9929
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.0965 18.8094 23.1235 30.68 23.3542

CAGE analysis