Hb_002492_010

Information

Type -
Description -
Location Contig2492: 102139-109796
Sequence    

Annotation

kegg
ID pop:POPTR_0005s19370g
description POPTRDRAFT_209085; hypothetical protein
nr
ID XP_011014078.1
description PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
swissprot
ID Q9SUG3
description Inositol-tetrakisphosphate 1-kinase 3 OS=Arabidopsis thaliana GN=ITPK3 PE=1 SV=2
trembl
ID B9H6R6
description Inositol-tetrakisphosphate 1-kinase OS=Populus trichocarpa GN=POPTR_0005s19370g PE=3 SV=2
Gene Ontology
ID GO:0005634
description inositol-tetrakisphosphate 1-kinase 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25901: 107226-107522 , PASA_asmbl_25902: 101936-109621 , PASA_asmbl_25904: 107550-107685 , PASA_asmbl_25905: 106442-106722
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002492_010 0.0 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
2 Hb_001716_020 0.0364425602 - - hydrolase, putative [Ricinus communis]
3 Hb_001481_060 0.0513735423 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
4 Hb_000087_060 0.05484306 - - protein transporter, putative [Ricinus communis]
5 Hb_004994_240 0.0557864243 - - hypothetical protein PRUPE_ppa004633mg [Prunus persica]
6 Hb_001089_050 0.0564011205 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
7 Hb_004143_100 0.057011576 - - conserved hypothetical protein [Ricinus communis]
8 Hb_105105_010 0.0575960974 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
9 Hb_007248_030 0.0596397142 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
10 Hb_003866_080 0.0602811062 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
11 Hb_000521_330 0.060415723 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001300_010 0.0606669361 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
13 Hb_003906_200 0.0610177708 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
14 Hb_003912_040 0.0625551137 - - hypothetical protein CISIN_1g005153mg [Citrus sinensis]
15 Hb_007062_030 0.0635822955 - - hypothetical protein VITISV_039033 [Vitis vinifera]
16 Hb_000029_060 0.064717216 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
17 Hb_002028_210 0.0647187426 - - PREDICTED: uncharacterized protein LOC105638038 [Jatropha curcas]
18 Hb_002205_250 0.0648816408 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
19 Hb_002110_080 0.0649694384 - - FH interacting protein 1 [Theobroma cacao]
20 Hb_000402_230 0.0656241699 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002492_010 Hb_002492_010 Hb_001716_020 Hb_001716_020 Hb_002492_010--Hb_001716_020 Hb_001481_060 Hb_001481_060 Hb_002492_010--Hb_001481_060 Hb_000087_060 Hb_000087_060 Hb_002492_010--Hb_000087_060 Hb_004994_240 Hb_004994_240 Hb_002492_010--Hb_004994_240 Hb_001089_050 Hb_001089_050 Hb_002492_010--Hb_001089_050 Hb_004143_100 Hb_004143_100 Hb_002492_010--Hb_004143_100 Hb_001716_020--Hb_001481_060 Hb_105105_010 Hb_105105_010 Hb_001716_020--Hb_105105_010 Hb_002205_250 Hb_002205_250 Hb_001716_020--Hb_002205_250 Hb_000028_130 Hb_000028_130 Hb_001716_020--Hb_000028_130 Hb_000029_060 Hb_000029_060 Hb_001716_020--Hb_000029_060 Hb_007248_030 Hb_007248_030 Hb_001481_060--Hb_007248_030 Hb_000345_160 Hb_000345_160 Hb_001481_060--Hb_000345_160 Hb_033312_040 Hb_033312_040 Hb_001481_060--Hb_033312_040 Hb_004037_020 Hb_004037_020 Hb_001481_060--Hb_004037_020 Hb_001205_200 Hb_001205_200 Hb_000087_060--Hb_001205_200 Hb_000087_060--Hb_001089_050 Hb_000358_230 Hb_000358_230 Hb_000087_060--Hb_000358_230 Hb_000076_160 Hb_000076_160 Hb_000087_060--Hb_000076_160 Hb_000454_130 Hb_000454_130 Hb_000087_060--Hb_000454_130 Hb_001300_010 Hb_001300_010 Hb_004994_240--Hb_001300_010 Hb_002232_480 Hb_002232_480 Hb_004994_240--Hb_002232_480 Hb_012239_020 Hb_012239_020 Hb_004994_240--Hb_012239_020 Hb_003398_080 Hb_003398_080 Hb_004994_240--Hb_003398_080 Hb_000856_040 Hb_000856_040 Hb_004994_240--Hb_000856_040 Hb_003866_080 Hb_003866_080 Hb_001089_050--Hb_003866_080 Hb_000402_230 Hb_000402_230 Hb_001089_050--Hb_000402_230 Hb_000861_080 Hb_000861_080 Hb_001089_050--Hb_000861_080 Hb_001545_150 Hb_001545_150 Hb_001089_050--Hb_001545_150 Hb_001089_050--Hb_004143_100 Hb_001089_050--Hb_001716_020 Hb_004143_100--Hb_000402_230 Hb_004143_100--Hb_003866_080 Hb_004128_130 Hb_004128_130 Hb_004143_100--Hb_004128_130 Hb_003120_080 Hb_003120_080 Hb_004143_100--Hb_003120_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.57263 14.7203 11.6387 12.4522 7.30372 9.91651
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.01795 8.42868 8.3938 9.56296 8.89016

CAGE analysis