Hb_003398_080

Information

Type -
Description -
Location Contig3398: 143725-148820
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20990g
description POPTRDRAFT_659670; hypothetical protein
nr
ID XP_012089039.1
description PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
swissprot
ID Q9C7B1
description Telomere repeat-binding protein 3 OS=Arabidopsis thaliana GN=TRP3 PE=1 SV=1
trembl
ID A0A067LKS0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01439 PE=4 SV=1
Gene Ontology
ID GO:0003677
description telomere repeat-binding protein 4 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35459: 143793-148786 , PASA_asmbl_35460: 144797-148780 , PASA_asmbl_35461: 148119-148341
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003398_080 0.0 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
2 Hb_001300_010 0.0514500337 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
3 Hb_000861_080 0.0620891195 - - PREDICTED: protein ELC-like [Jatropha curcas]
4 Hb_000402_230 0.0632230911 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
5 Hb_004994_240 0.0647365765 - - hypothetical protein PRUPE_ppa004633mg [Prunus persica]
6 Hb_001545_150 0.0649630623 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
7 Hb_000120_910 0.0663853617 - - plant ubiquilin, putative [Ricinus communis]
8 Hb_001089_050 0.0665680885 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
9 Hb_000069_130 0.0687328614 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
10 Hb_000802_090 0.0716165043 - - ornithine aminotransferase, putative [Ricinus communis]
11 Hb_002492_010 0.0732544401 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
12 Hb_005389_160 0.0737958659 - - PREDICTED: casein kinase I [Jatropha curcas]
13 Hb_004143_100 0.0742359723 - - conserved hypothetical protein [Ricinus communis]
14 Hb_012239_020 0.0754690096 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
15 Hb_000363_120 0.075824385 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
16 Hb_002232_480 0.0759919568 - - PREDICTED: telomerase reverse transcriptase [Jatropha curcas]
17 Hb_000094_090 0.0782314266 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
18 Hb_007017_040 0.0783325771 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
19 Hb_000809_170 0.0793142192 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog isoform X1 [Jatropha curcas]
20 Hb_000347_400 0.0793840901 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003398_080 Hb_003398_080 Hb_001300_010 Hb_001300_010 Hb_003398_080--Hb_001300_010 Hb_000861_080 Hb_000861_080 Hb_003398_080--Hb_000861_080 Hb_000402_230 Hb_000402_230 Hb_003398_080--Hb_000402_230 Hb_004994_240 Hb_004994_240 Hb_003398_080--Hb_004994_240 Hb_001545_150 Hb_001545_150 Hb_003398_080--Hb_001545_150 Hb_000120_910 Hb_000120_910 Hb_003398_080--Hb_000120_910 Hb_001300_010--Hb_004994_240 Hb_002492_010 Hb_002492_010 Hb_001300_010--Hb_002492_010 Hb_001300_010--Hb_000120_910 Hb_002232_480 Hb_002232_480 Hb_001300_010--Hb_002232_480 Hb_000856_040 Hb_000856_040 Hb_001300_010--Hb_000856_040 Hb_001089_050 Hb_001089_050 Hb_000861_080--Hb_001089_050 Hb_000803_070 Hb_000803_070 Hb_000861_080--Hb_000803_070 Hb_001195_530 Hb_001195_530 Hb_000861_080--Hb_001195_530 Hb_000866_460 Hb_000866_460 Hb_000861_080--Hb_000866_460 Hb_020831_030 Hb_020831_030 Hb_000861_080--Hb_020831_030 Hb_004143_100 Hb_004143_100 Hb_000402_230--Hb_004143_100 Hb_000402_230--Hb_001089_050 Hb_000009_500 Hb_000009_500 Hb_000402_230--Hb_000009_500 Hb_008253_020 Hb_008253_020 Hb_000402_230--Hb_008253_020 Hb_003866_080 Hb_003866_080 Hb_000402_230--Hb_003866_080 Hb_011849_040 Hb_011849_040 Hb_000402_230--Hb_011849_040 Hb_004994_240--Hb_002232_480 Hb_004994_240--Hb_002492_010 Hb_012239_020 Hb_012239_020 Hb_004994_240--Hb_012239_020 Hb_004994_240--Hb_000856_040 Hb_000479_070 Hb_000479_070 Hb_001545_150--Hb_000479_070 Hb_001545_150--Hb_001089_050 Hb_031042_050 Hb_031042_050 Hb_001545_150--Hb_031042_050 Hb_001545_150--Hb_000402_230 Hb_003918_030 Hb_003918_030 Hb_001545_150--Hb_003918_030 Hb_001279_120 Hb_001279_120 Hb_001545_150--Hb_001279_120 Hb_004517_020 Hb_004517_020 Hb_000120_910--Hb_004517_020 Hb_000977_300 Hb_000977_300 Hb_000120_910--Hb_000977_300 Hb_027654_020 Hb_027654_020 Hb_000120_910--Hb_027654_020 Hb_000949_020 Hb_000949_020 Hb_000120_910--Hb_000949_020 Hb_000809_160 Hb_000809_160 Hb_000120_910--Hb_000809_160 Hb_001723_010 Hb_001723_010 Hb_000120_910--Hb_001723_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7333 47.4599 28.8684 28.7527 20.9067 18.1687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.2258 16.6917 20.8162 20.0752 19.0032

CAGE analysis