Hb_012239_020

Information

Type -
Description -
Location Contig12239: 12667-24412
Sequence    

Annotation

kegg
ID rcu:RCOM_0598020
description hypothetical protein
nr
ID XP_012072302.1
description PREDICTED: protein VAC14 homolog [Jatropha curcas]
swissprot
ID Q9ZU97
description Protein VAC14 homolog OS=Arabidopsis thaliana GN=VAC14 PE=1 SV=2
trembl
ID A0A067L1Z3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04757 PE=4 SV=1
Gene Ontology
ID GO:0070772
description protein vac14 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06803: 12735-24412 , PASA_asmbl_06804: 20109-20334 , PASA_asmbl_06805: 22535-22868 , PASA_asmbl_06806: 23397-23525 , PASA_asmbl_06807: 23027-23371
cDNA
(Sanger)
(ID:Location)		 013_N09.ab1: 12737-18426 , 051_C16.ab1: 12737-18136

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012239_020 0.0 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
2 Hb_000738_020 0.0556124831 - - zinc finger protein, putative [Ricinus communis]
3 Hb_000484_130 0.0623332385 - - splicing factor, putative [Ricinus communis]
4 Hb_000086_420 0.0636182839 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
5 Hb_004994_240 0.0642258151 - - hypothetical protein PRUPE_ppa004633mg [Prunus persica]
6 Hb_001300_010 0.0648261538 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
7 Hb_000327_140 0.0667836363 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
8 Hb_000029_060 0.0673276925 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
9 Hb_002492_010 0.0734094948 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
10 Hb_002232_480 0.0748707482 - - PREDICTED: telomerase reverse transcriptase [Jatropha curcas]
11 Hb_003398_080 0.0754690096 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
12 Hb_062226_130 0.0765754352 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
13 Hb_004916_010 0.0781002656 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
14 Hb_006588_210 0.0786424153 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
15 Hb_001221_110 0.078920789 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
16 Hb_002820_030 0.0789326804 - - PREDICTED: uncharacterized protein LOC105638922 [Jatropha curcas]
17 Hb_003849_110 0.0792754949 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
18 Hb_000087_060 0.0800267471 - - protein transporter, putative [Ricinus communis]
19 Hb_000291_010 0.080399356 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
20 Hb_007017_040 0.084558826 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]

Gene co-expression network

sample Hb_012239_020 Hb_012239_020 Hb_000738_020 Hb_000738_020 Hb_012239_020--Hb_000738_020 Hb_000484_130 Hb_000484_130 Hb_012239_020--Hb_000484_130 Hb_000086_420 Hb_000086_420 Hb_012239_020--Hb_000086_420 Hb_004994_240 Hb_004994_240 Hb_012239_020--Hb_004994_240 Hb_001300_010 Hb_001300_010 Hb_012239_020--Hb_001300_010 Hb_000327_140 Hb_000327_140 Hb_012239_020--Hb_000327_140 Hb_062226_130 Hb_062226_130 Hb_000738_020--Hb_062226_130 Hb_002073_200 Hb_002073_200 Hb_000738_020--Hb_002073_200 Hb_005162_090 Hb_005162_090 Hb_000738_020--Hb_005162_090 Hb_003849_110 Hb_003849_110 Hb_000738_020--Hb_003849_110 Hb_000869_080 Hb_000869_080 Hb_000738_020--Hb_000869_080 Hb_022256_020 Hb_022256_020 Hb_000484_130--Hb_022256_020 Hb_001359_050 Hb_001359_050 Hb_000484_130--Hb_001359_050 Hb_000484_130--Hb_003849_110 Hb_001221_110 Hb_001221_110 Hb_000484_130--Hb_001221_110 Hb_003464_090 Hb_003464_090 Hb_000484_130--Hb_003464_090 Hb_000086_420--Hb_000327_140 Hb_000029_060 Hb_000029_060 Hb_000086_420--Hb_000029_060 Hb_000086_420--Hb_004994_240 Hb_000292_100 Hb_000292_100 Hb_000086_420--Hb_000292_100 Hb_000086_420--Hb_000738_020 Hb_004994_240--Hb_001300_010 Hb_002232_480 Hb_002232_480 Hb_004994_240--Hb_002232_480 Hb_002492_010 Hb_002492_010 Hb_004994_240--Hb_002492_010 Hb_003398_080 Hb_003398_080 Hb_004994_240--Hb_003398_080 Hb_000856_040 Hb_000856_040 Hb_004994_240--Hb_000856_040 Hb_001300_010--Hb_003398_080 Hb_001300_010--Hb_002492_010 Hb_000120_910 Hb_000120_910 Hb_001300_010--Hb_000120_910 Hb_001300_010--Hb_002232_480 Hb_001300_010--Hb_000856_040 Hb_000327_140--Hb_000029_060 Hb_000327_140--Hb_004994_240 Hb_000120_030 Hb_000120_030 Hb_000327_140--Hb_000120_030 Hb_000327_140--Hb_002232_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2612 23.0347 17.8639 14.7232 7.51248 10.0303
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3221 13.9163 12.6689 11.3775 10.0516

CAGE analysis