Hb_002232_480

Information

Type -
Description -
Location Contig2232: 365144-374079
Sequence    

Annotation

kegg
ID cit:102625932
description telomerase reverse transcriptase-like
nr
ID XP_012074552.1
description PREDICTED: telomerase reverse transcriptase [Jatropha curcas]
swissprot
ID Q9SPU7
description Telomerase reverse transcriptase OS=Arabidopsis thaliana GN=TERT PE=1 SV=1
trembl
ID V4TLS7
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030541mg PE=4 SV=1
Gene Ontology
ID GO:0003720
description telomerase reverse transcriptase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23144: 366215-367129 , PASA_asmbl_23145: 367415-367579 , PASA_asmbl_23146: 369278-369715 , PASA_asmbl_23148: 370304-370882 , PASA_asmbl_23149: 370956-373064 , PASA_asmbl_23150: 373124-374129
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_480 0.0 - - PREDICTED: telomerase reverse transcriptase [Jatropha curcas]
2 Hb_004994_240 0.0451677163 - - hypothetical protein PRUPE_ppa004633mg [Prunus persica]
3 Hb_011360_050 0.0591010855 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
4 Hb_000802_090 0.0608179044 - - ornithine aminotransferase, putative [Ricinus communis]
5 Hb_001300_010 0.0631005285 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
6 Hb_001366_090 0.0668098758 transcription factor TF Family: NAC hypothetical protein RCOM_1341380 [Ricinus communis]
7 Hb_007017_040 0.0689717082 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
8 Hb_000327_140 0.0733087365 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
9 Hb_012239_020 0.0748707482 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
10 Hb_003398_080 0.0759919568 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
11 Hb_002110_080 0.0764615612 - - FH interacting protein 1 [Theobroma cacao]
12 Hb_002492_010 0.0767719385 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
13 Hb_000087_060 0.0773377494 - - protein transporter, putative [Ricinus communis]
14 Hb_002413_010 0.079334521 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_001699_010 0.0799631996 - - drought-inducible protein [Manihot esculenta]
16 Hb_006573_040 0.0811035018 - - DNA binding protein, putative [Ricinus communis]
17 Hb_000086_420 0.08155797 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
18 Hb_010775_030 0.0821430511 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
19 Hb_000046_570 0.0827061699 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
20 Hb_000738_020 0.0827340867 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002232_480 Hb_002232_480 Hb_004994_240 Hb_004994_240 Hb_002232_480--Hb_004994_240 Hb_011360_050 Hb_011360_050 Hb_002232_480--Hb_011360_050 Hb_000802_090 Hb_000802_090 Hb_002232_480--Hb_000802_090 Hb_001300_010 Hb_001300_010 Hb_002232_480--Hb_001300_010 Hb_001366_090 Hb_001366_090 Hb_002232_480--Hb_001366_090 Hb_007017_040 Hb_007017_040 Hb_002232_480--Hb_007017_040 Hb_004994_240--Hb_001300_010 Hb_002492_010 Hb_002492_010 Hb_004994_240--Hb_002492_010 Hb_012239_020 Hb_012239_020 Hb_004994_240--Hb_012239_020 Hb_003398_080 Hb_003398_080 Hb_004994_240--Hb_003398_080 Hb_000856_040 Hb_000856_040 Hb_004994_240--Hb_000856_040 Hb_011360_050--Hb_000802_090 Hb_007839_020 Hb_007839_020 Hb_011360_050--Hb_007839_020 Hb_002982_020 Hb_002982_020 Hb_011360_050--Hb_002982_020 Hb_001329_200 Hb_001329_200 Hb_011360_050--Hb_001329_200 Hb_000089_180 Hb_000089_180 Hb_011360_050--Hb_000089_180 Hb_000802_090--Hb_001329_200 Hb_000802_090--Hb_003398_080 Hb_000205_240 Hb_000205_240 Hb_000802_090--Hb_000205_240 Hb_000802_090--Hb_007839_020 Hb_001300_010--Hb_003398_080 Hb_001300_010--Hb_002492_010 Hb_000120_910 Hb_000120_910 Hb_001300_010--Hb_000120_910 Hb_001300_010--Hb_000856_040 Hb_006573_040 Hb_006573_040 Hb_001366_090--Hb_006573_040 Hb_001366_090--Hb_004994_240 Hb_004586_060 Hb_004586_060 Hb_001366_090--Hb_004586_060 Hb_000046_570 Hb_000046_570 Hb_001366_090--Hb_000046_570 Hb_000236_490 Hb_000236_490 Hb_001366_090--Hb_000236_490 Hb_007017_040--Hb_004994_240 Hb_084490_010 Hb_084490_010 Hb_007017_040--Hb_084490_010 Hb_003688_180 Hb_003688_180 Hb_007017_040--Hb_003688_180 Hb_007017_040--Hb_003398_080 Hb_007017_040--Hb_011360_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.43609 3.3604 2.85822 3.15633 1.59111 1.34989
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.5444 1.93654 1.44811 1.86099 1.56373

CAGE analysis