Hb_003688_180

Information

Type -
Description -
Location Contig3688: 112493-114403
Sequence    

Annotation

kegg
ID rcu:RCOM_1469700
description protein binding protein, putative
nr
ID XP_012080385.1
description PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
swissprot
ID Q9LZD3
description Exocyst complex component EXO70A1 OS=Arabidopsis thaliana GN=EXO70A1 PE=1 SV=1
trembl
ID A0A067K548
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11727 PE=4 SV=1
Gene Ontology
ID GO:0000145
description exocyst complex component exo70b1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37980: 112294-113511 , PASA_asmbl_37982: 114420-115412
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003688_180 0.0 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
2 Hb_011360_050 0.0745829033 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
3 Hb_007017_040 0.076184014 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
4 Hb_020178_040 0.0809479009 - - conserved hypothetical protein [Ricinus communis]
5 Hb_017387_010 0.0810534342 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
6 Hb_000753_230 0.0846825503 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]
7 Hb_002982_020 0.0855815837 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
8 Hb_008279_040 0.086911608 - - Rer1 family protein isoform 2 [Theobroma cacao]
9 Hb_000802_090 0.0882506661 - - ornithine aminotransferase, putative [Ricinus communis]
10 Hb_000347_400 0.0933398757 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
11 Hb_001328_080 0.0934470802 - - PREDICTED: importin subunit alpha-1b [Jatropha curcas]
12 Hb_000327_140 0.0935588517 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
13 Hb_023344_150 0.0936593757 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
14 Hb_001329_200 0.0939343891 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
15 Hb_002110_080 0.0960123968 - - FH interacting protein 1 [Theobroma cacao]
16 Hb_084490_010 0.0970100887 - - PREDICTED: protein root UVB sensitive 6 isoform X2 [Jatropha curcas]
17 Hb_000490_060 0.097764112 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
18 Hb_002232_480 0.0980221502 - - PREDICTED: telomerase reverse transcriptase [Jatropha curcas]
19 Hb_000029_060 0.0981964291 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
20 Hb_007839_020 0.0987508384 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003688_180 Hb_003688_180 Hb_011360_050 Hb_011360_050 Hb_003688_180--Hb_011360_050 Hb_007017_040 Hb_007017_040 Hb_003688_180--Hb_007017_040 Hb_020178_040 Hb_020178_040 Hb_003688_180--Hb_020178_040 Hb_017387_010 Hb_017387_010 Hb_003688_180--Hb_017387_010 Hb_000753_230 Hb_000753_230 Hb_003688_180--Hb_000753_230 Hb_002982_020 Hb_002982_020 Hb_003688_180--Hb_002982_020 Hb_000802_090 Hb_000802_090 Hb_011360_050--Hb_000802_090 Hb_007839_020 Hb_007839_020 Hb_011360_050--Hb_007839_020 Hb_002232_480 Hb_002232_480 Hb_011360_050--Hb_002232_480 Hb_011360_050--Hb_002982_020 Hb_001329_200 Hb_001329_200 Hb_011360_050--Hb_001329_200 Hb_000089_180 Hb_000089_180 Hb_011360_050--Hb_000089_180 Hb_004994_240 Hb_004994_240 Hb_007017_040--Hb_004994_240 Hb_007017_040--Hb_002232_480 Hb_084490_010 Hb_084490_010 Hb_007017_040--Hb_084490_010 Hb_003398_080 Hb_003398_080 Hb_007017_040--Hb_003398_080 Hb_007017_040--Hb_011360_050 Hb_002272_030 Hb_002272_030 Hb_020178_040--Hb_002272_030 Hb_002042_050 Hb_002042_050 Hb_020178_040--Hb_002042_050 Hb_001723_100 Hb_001723_100 Hb_020178_040--Hb_001723_100 Hb_002071_070 Hb_002071_070 Hb_020178_040--Hb_002071_070 Hb_000243_260 Hb_000243_260 Hb_020178_040--Hb_000243_260 Hb_000347_400 Hb_000347_400 Hb_020178_040--Hb_000347_400 Hb_006452_120 Hb_006452_120 Hb_017387_010--Hb_006452_120 Hb_001221_430 Hb_001221_430 Hb_017387_010--Hb_001221_430 Hb_003544_030 Hb_003544_030 Hb_017387_010--Hb_003544_030 Hb_000574_450 Hb_000574_450 Hb_017387_010--Hb_000574_450 Hb_001434_080 Hb_001434_080 Hb_017387_010--Hb_001434_080 Hb_000962_030 Hb_000962_030 Hb_017387_010--Hb_000962_030 Hb_000173_470 Hb_000173_470 Hb_000753_230--Hb_000173_470 Hb_066920_030 Hb_066920_030 Hb_000753_230--Hb_066920_030 Hb_038574_010 Hb_038574_010 Hb_000753_230--Hb_038574_010 Hb_000753_230--Hb_017387_010 Hb_000753_230--Hb_020178_040 Hb_001269_380 Hb_001269_380 Hb_002982_020--Hb_001269_380 Hb_012092_050 Hb_012092_050 Hb_002982_020--Hb_012092_050 Hb_002982_020--Hb_006452_120 Hb_000778_010 Hb_000778_010 Hb_002982_020--Hb_000778_010 Hb_002982_020--Hb_001221_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.08351 9.32602 4.72522 8.86433 3.9498 3.55921
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.34738 5.26754 5.30656 5.59092 4.3758

CAGE analysis