Hb_007839_020

Information

Type -
Description -
Location Contig7839: 11835-20696
Sequence    

Annotation

kegg
ID rcu:RCOM_0034730
description hypothetical protein
nr
ID XP_002529943.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q5F471
description Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Gallus gallus GN=PPP6R3 PE=2 SV=1
trembl
ID B9SVC4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0034730 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58028: 11833-20688 , PASA_asmbl_58029: 12713-20688 , PASA_asmbl_58031: 13689-13894
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007839_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010407_080 0.0457663079 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
3 Hb_011360_050 0.0568581412 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
4 Hb_001329_200 0.061044569 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
5 Hb_001328_080 0.0674882186 - - PREDICTED: importin subunit alpha-1b [Jatropha curcas]
6 Hb_001408_110 0.0707568623 - - hypothetical protein EUGRSUZ_I02762 [Eucalyptus grandis]
7 Hb_022425_060 0.0707715219 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
8 Hb_002915_060 0.0730499292 - - PREDICTED: serine/threonine-protein kinase CTR1-like [Jatropha curcas]
9 Hb_002272_030 0.0762944208 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
10 Hb_000802_090 0.0772617529 - - ornithine aminotransferase, putative [Ricinus communis]
11 Hb_020178_040 0.077281399 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004994_240 0.0775486118 - - hypothetical protein PRUPE_ppa004633mg [Prunus persica]
13 Hb_000089_180 0.077878019 - - PREDICTED: homoserine kinase-like [Jatropha curcas]
14 Hb_000347_400 0.0783469198 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
15 Hb_024650_080 0.0786644891 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]
16 Hb_002686_230 0.0787287266 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_001140_090 0.0793246003 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001269_380 0.0800600934 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
19 Hb_005215_020 0.0808134756 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44 [Jatropha curcas]
20 Hb_000704_030 0.0813388091 - - PREDICTED: probable aquaporin SIP2-1 [Cicer arietinum]

Gene co-expression network

sample Hb_007839_020 Hb_007839_020 Hb_010407_080 Hb_010407_080 Hb_007839_020--Hb_010407_080 Hb_011360_050 Hb_011360_050 Hb_007839_020--Hb_011360_050 Hb_001329_200 Hb_001329_200 Hb_007839_020--Hb_001329_200 Hb_001328_080 Hb_001328_080 Hb_007839_020--Hb_001328_080 Hb_001408_110 Hb_001408_110 Hb_007839_020--Hb_001408_110 Hb_022425_060 Hb_022425_060 Hb_007839_020--Hb_022425_060 Hb_002686_230 Hb_002686_230 Hb_010407_080--Hb_002686_230 Hb_010407_080--Hb_022425_060 Hb_001269_380 Hb_001269_380 Hb_010407_080--Hb_001269_380 Hb_010407_080--Hb_001329_200 Hb_033312_130 Hb_033312_130 Hb_010407_080--Hb_033312_130 Hb_000802_090 Hb_000802_090 Hb_011360_050--Hb_000802_090 Hb_002232_480 Hb_002232_480 Hb_011360_050--Hb_002232_480 Hb_002982_020 Hb_002982_020 Hb_011360_050--Hb_002982_020 Hb_011360_050--Hb_001329_200 Hb_000089_180 Hb_000089_180 Hb_011360_050--Hb_000089_180 Hb_009615_160 Hb_009615_160 Hb_001329_200--Hb_009615_160 Hb_001329_200--Hb_022425_060 Hb_001329_200--Hb_000802_090 Hb_001329_200--Hb_001328_080 Hb_002915_060 Hb_002915_060 Hb_001328_080--Hb_002915_060 Hb_006006_040 Hb_006006_040 Hb_001328_080--Hb_006006_040 Hb_023344_150 Hb_023344_150 Hb_001328_080--Hb_023344_150 Hb_000926_260 Hb_000926_260 Hb_001328_080--Hb_000926_260 Hb_024650_080 Hb_024650_080 Hb_001408_110--Hb_024650_080 Hb_001408_110--Hb_000089_180 Hb_004037_020 Hb_004037_020 Hb_001408_110--Hb_004037_020 Hb_001241_010 Hb_001241_010 Hb_001408_110--Hb_001241_010 Hb_001408_110--Hb_010407_080 Hb_001828_170 Hb_001828_170 Hb_022425_060--Hb_001828_170 Hb_020805_150 Hb_020805_150 Hb_022425_060--Hb_020805_150 Hb_003918_030 Hb_003918_030 Hb_022425_060--Hb_003918_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.93783 26.4366 17.555 23.4414 7.60958 8.79996
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3303 11.0321 11.7764 17.3279 16.2685

CAGE analysis