Hb_002686_230

Information

Type -
Description -
Location Contig2686: 149543-154324
Sequence    

Annotation

kegg
ID rcu:RCOM_1122070
description ubiquitin-protein ligase, putative
nr
ID XP_002525459.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SHJ0
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1122070 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring u-box superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28030: 149525-153502
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_230 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_010407_080 0.0592060798 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
3 Hb_009288_010 0.062206291 desease resistance Gene Name: Clp_N ERD1 protein, chloroplast precursor, putative [Ricinus communis]
4 Hb_009658_030 0.0721901069 - - PREDICTED: AP-5 complex subunit beta-1 [Jatropha curcas]
5 Hb_033312_130 0.0736213376 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
6 Hb_001008_130 0.0773849668 transcription factor TF Family: mTERF PREDICTED: cytochrome c1-2, heme protein, mitochondrial-like [Elaeis guineensis]
7 Hb_022425_060 0.0775654004 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
8 Hb_007839_020 0.0787287266 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004128_030 0.082727008 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 8-like isoform X1 [Jatropha curcas]
10 Hb_006100_020 0.0848728375 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
11 Hb_002272_030 0.0852130252 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
12 Hb_003929_210 0.085461551 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
13 Hb_006970_050 0.087127467 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
14 Hb_000169_020 0.0872035402 transcription factor TF Family: C2C2-CO-like hypothetical protein RCOM_0555710 [Ricinus communis]
15 Hb_000340_040 0.0886263562 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
16 Hb_002631_210 0.0894670597 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
17 Hb_002157_080 0.0894819153 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
18 Hb_001269_380 0.0905897499 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
19 Hb_004204_010 0.0914992728 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
20 Hb_048476_080 0.0917936176 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]

Gene co-expression network

sample Hb_002686_230 Hb_002686_230 Hb_010407_080 Hb_010407_080 Hb_002686_230--Hb_010407_080 Hb_009288_010 Hb_009288_010 Hb_002686_230--Hb_009288_010 Hb_009658_030 Hb_009658_030 Hb_002686_230--Hb_009658_030 Hb_033312_130 Hb_033312_130 Hb_002686_230--Hb_033312_130 Hb_001008_130 Hb_001008_130 Hb_002686_230--Hb_001008_130 Hb_022425_060 Hb_022425_060 Hb_002686_230--Hb_022425_060 Hb_007839_020 Hb_007839_020 Hb_010407_080--Hb_007839_020 Hb_010407_080--Hb_022425_060 Hb_001269_380 Hb_001269_380 Hb_010407_080--Hb_001269_380 Hb_001329_200 Hb_001329_200 Hb_010407_080--Hb_001329_200 Hb_010407_080--Hb_033312_130 Hb_006970_050 Hb_006970_050 Hb_009288_010--Hb_006970_050 Hb_002272_030 Hb_002272_030 Hb_009288_010--Hb_002272_030 Hb_002259_170 Hb_002259_170 Hb_009288_010--Hb_002259_170 Hb_006100_020 Hb_006100_020 Hb_009288_010--Hb_006100_020 Hb_002042_050 Hb_002042_050 Hb_009288_010--Hb_002042_050 Hb_005977_070 Hb_005977_070 Hb_009658_030--Hb_005977_070 Hb_009658_030--Hb_002272_030 Hb_066920_030 Hb_066920_030 Hb_009658_030--Hb_066920_030 Hb_004435_030 Hb_004435_030 Hb_009658_030--Hb_004435_030 Hb_002157_080 Hb_002157_080 Hb_009658_030--Hb_002157_080 Hb_003929_210 Hb_003929_210 Hb_033312_130--Hb_003929_210 Hb_033312_130--Hb_001008_130 Hb_033312_130--Hb_006100_020 Hb_000960_080 Hb_000960_080 Hb_033312_130--Hb_000960_080 Hb_000035_100 Hb_000035_100 Hb_033312_130--Hb_000035_100 Hb_002357_070 Hb_002357_070 Hb_033312_130--Hb_002357_070 Hb_006210_010 Hb_006210_010 Hb_001008_130--Hb_006210_010 Hb_001008_130--Hb_006100_020 Hb_048476_080 Hb_048476_080 Hb_001008_130--Hb_048476_080 Hb_003680_020 Hb_003680_020 Hb_001008_130--Hb_003680_020 Hb_001008_130--Hb_000960_080 Hb_001828_170 Hb_001828_170 Hb_022425_060--Hb_001828_170 Hb_020805_150 Hb_020805_150 Hb_022425_060--Hb_020805_150 Hb_022425_060--Hb_001329_200 Hb_022425_060--Hb_007839_020 Hb_003918_030 Hb_003918_030 Hb_022425_060--Hb_003918_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.21323 18.0055 9.65556 12.2046 4.40127 5.88909
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.47166 6.47673 7.07922 8.95042 14.2988

CAGE analysis