Hb_006970_050

Information

Type transcription factor
Description TF Family: EIL
Location Contig6970: 68555-70333
Sequence    

Annotation

kegg
ID rcu:RCOM_1576950
description ETHYLENE-INSENSITIVE3 protein, putative
nr
ID XP_002513449.1
description ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
swissprot
ID O23116
description ETHYLENE INSENSITIVE 3-like 3 protein OS=Arabidopsis thaliana GN=EIL3 PE=1 SV=1
trembl
ID B9RI80
description ETHYLENE-INSENSITIVE3 protein, putative OS=Ricinus communis GN=RCOM_1576950 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene insensitive 3-like 3 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54647: 67776-70553 , PASA_asmbl_54648: 67988-70553
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006970_050 0.0 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
2 Hb_009288_010 0.0652770567 desease resistance Gene Name: Clp_N ERD1 protein, chloroplast precursor, putative [Ricinus communis]
3 Hb_002272_030 0.0764380901 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
4 Hb_000656_390 0.0815921182 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
5 Hb_000490_060 0.0856726307 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
6 Hb_002686_230 0.087127467 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_006100_020 0.0882535647 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
8 Hb_002042_050 0.0895825274 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
9 Hb_000327_140 0.0906525934 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
10 Hb_020178_040 0.0914365561 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000731_200 0.0932950562 - - PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Jatropha curcas]
12 Hb_007839_020 0.0953640702 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001328_080 0.0963910186 - - PREDICTED: importin subunit alpha-1b [Jatropha curcas]
14 Hb_000684_040 0.0973592122 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
15 Hb_000086_420 0.0986318283 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
16 Hb_009658_030 0.1005703679 - - PREDICTED: AP-5 complex subunit beta-1 [Jatropha curcas]
17 Hb_002259_170 0.1005847835 - - PREDICTED: internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial-like [Jatropha curcas]
18 Hb_023344_150 0.1013607544 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
19 Hb_000567_230 0.1013969562 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
20 Hb_000951_130 0.1014647467 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]

Gene co-expression network

sample Hb_006970_050 Hb_006970_050 Hb_009288_010 Hb_009288_010 Hb_006970_050--Hb_009288_010 Hb_002272_030 Hb_002272_030 Hb_006970_050--Hb_002272_030 Hb_000656_390 Hb_000656_390 Hb_006970_050--Hb_000656_390 Hb_000490_060 Hb_000490_060 Hb_006970_050--Hb_000490_060 Hb_002686_230 Hb_002686_230 Hb_006970_050--Hb_002686_230 Hb_006100_020 Hb_006100_020 Hb_006970_050--Hb_006100_020 Hb_009288_010--Hb_002686_230 Hb_009288_010--Hb_002272_030 Hb_002259_170 Hb_002259_170 Hb_009288_010--Hb_002259_170 Hb_009288_010--Hb_006100_020 Hb_002042_050 Hb_002042_050 Hb_009288_010--Hb_002042_050 Hb_020178_040 Hb_020178_040 Hb_002272_030--Hb_020178_040 Hb_002272_030--Hb_002042_050 Hb_000567_230 Hb_000567_230 Hb_002272_030--Hb_000567_230 Hb_001723_100 Hb_001723_100 Hb_002272_030--Hb_001723_100 Hb_002830_010 Hb_002830_010 Hb_002272_030--Hb_002830_010 Hb_000951_130 Hb_000951_130 Hb_000656_390--Hb_000951_130 Hb_000656_390--Hb_009288_010 Hb_000656_390--Hb_001723_100 Hb_000152_330 Hb_000152_330 Hb_000656_390--Hb_000152_330 Hb_000656_390--Hb_002272_030 Hb_000684_040 Hb_000684_040 Hb_000490_060--Hb_000684_040 Hb_003528_050 Hb_003528_050 Hb_000490_060--Hb_003528_050 Hb_000490_060--Hb_020178_040 Hb_003228_110 Hb_003228_110 Hb_000490_060--Hb_003228_110 Hb_050847_050 Hb_050847_050 Hb_000490_060--Hb_050847_050 Hb_010407_080 Hb_010407_080 Hb_002686_230--Hb_010407_080 Hb_009658_030 Hb_009658_030 Hb_002686_230--Hb_009658_030 Hb_033312_130 Hb_033312_130 Hb_002686_230--Hb_033312_130 Hb_001008_130 Hb_001008_130 Hb_002686_230--Hb_001008_130 Hb_022425_060 Hb_022425_060 Hb_002686_230--Hb_022425_060 Hb_006100_020--Hb_002042_050 Hb_006100_020--Hb_033312_130 Hb_001141_240 Hb_001141_240 Hb_006100_020--Hb_001141_240 Hb_048476_080 Hb_048476_080 Hb_006100_020--Hb_048476_080 Hb_006100_020--Hb_001008_130 Hb_000169_020 Hb_000169_020 Hb_006100_020--Hb_000169_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.06609 24.9999 18.3994 20.4714 5.34608 7.60265
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.38199 16.1493 12.5831 15.0659 18.7061

CAGE analysis