Hb_000656_390

Information

Type -
Description -
Location Contig656: 363306-368293
Sequence    

Annotation

kegg
ID pop:POPTR_0001s16830g
description POPTRDRAFT_180724; hypothetical protein
nr
ID XP_012068876.1
description PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
swissprot
ID Q9SYH1
description Probable GTP diphosphokinase RSH3, chloroplastic OS=Arabidopsis thaliana GN=RSH3 PE=2 SV=1
trembl
ID A0A067L885
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24694 PE=4 SV=1
Gene Ontology
ID GO:0015969
description probable gtp diphosphokinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52754: 363326-368270 , PASA_asmbl_52755: 364217-364937
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000656_390 0.0 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
2 Hb_000951_130 0.0707567297 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
3 Hb_006970_050 0.0815921182 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
4 Hb_009288_010 0.0835159125 desease resistance Gene Name: Clp_N ERD1 protein, chloroplast precursor, putative [Ricinus communis]
5 Hb_001723_100 0.0870128491 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
6 Hb_000152_330 0.0891103656 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
7 Hb_002272_030 0.0925863372 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
8 Hb_020178_040 0.09486241 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000270_120 0.0969629548 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
10 Hb_000417_300 0.0987482961 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 [Jatropha curcas]
11 Hb_002217_090 0.1015745666 - - PREDICTED: probable protein phosphatase 2C 13 [Jatropha curcas]
12 Hb_002686_230 0.1034251515 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_000012_240 0.1076505447 - - PREDICTED: ferrochelatase-2, chloroplastic [Jatropha curcas]
14 Hb_026048_110 0.107966966 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
15 Hb_007839_020 0.1102734078 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000912_100 0.1104408334 - - PREDICTED: CMP-sialic acid transporter 3-like isoform X2 [Elaeis guineensis]
17 Hb_002042_170 0.111248758 - - RING/U-box superfamily protein [Theobroma cacao]
18 Hb_038574_010 0.1113440871 - - PREDICTED: vacuolar cation/proton exchanger 3-like isoform X2 [Populus euphratica]
19 Hb_000753_230 0.1124171072 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]
20 Hb_000347_400 0.1126450759 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000656_390 Hb_000656_390 Hb_000951_130 Hb_000951_130 Hb_000656_390--Hb_000951_130 Hb_006970_050 Hb_006970_050 Hb_000656_390--Hb_006970_050 Hb_009288_010 Hb_009288_010 Hb_000656_390--Hb_009288_010 Hb_001723_100 Hb_001723_100 Hb_000656_390--Hb_001723_100 Hb_000152_330 Hb_000152_330 Hb_000656_390--Hb_000152_330 Hb_002272_030 Hb_002272_030 Hb_000656_390--Hb_002272_030 Hb_000951_130--Hb_001723_100 Hb_020178_040 Hb_020178_040 Hb_000951_130--Hb_020178_040 Hb_000173_470 Hb_000173_470 Hb_000951_130--Hb_000173_470 Hb_000347_400 Hb_000347_400 Hb_000951_130--Hb_000347_400 Hb_000951_130--Hb_002272_030 Hb_006970_050--Hb_009288_010 Hb_006970_050--Hb_002272_030 Hb_000490_060 Hb_000490_060 Hb_006970_050--Hb_000490_060 Hb_002686_230 Hb_002686_230 Hb_006970_050--Hb_002686_230 Hb_006100_020 Hb_006100_020 Hb_006970_050--Hb_006100_020 Hb_009288_010--Hb_002686_230 Hb_009288_010--Hb_002272_030 Hb_002259_170 Hb_002259_170 Hb_009288_010--Hb_002259_170 Hb_009288_010--Hb_006100_020 Hb_002042_050 Hb_002042_050 Hb_009288_010--Hb_002042_050 Hb_001723_100--Hb_020178_040 Hb_066920_030 Hb_066920_030 Hb_001723_100--Hb_066920_030 Hb_001723_100--Hb_002272_030 Hb_001404_110 Hb_001404_110 Hb_001723_100--Hb_001404_110 Hb_002631_210 Hb_002631_210 Hb_001723_100--Hb_002631_210 Hb_001723_100--Hb_000347_400 Hb_000270_120 Hb_000270_120 Hb_000152_330--Hb_000270_120 Hb_000152_330--Hb_000951_130 Hb_001411_140 Hb_001411_140 Hb_000152_330--Hb_001411_140 Hb_000152_330--Hb_000173_470 Hb_000152_330--Hb_001723_100 Hb_002272_030--Hb_020178_040 Hb_002272_030--Hb_002042_050 Hb_000567_230 Hb_000567_230 Hb_002272_030--Hb_000567_230 Hb_002830_010 Hb_002830_010 Hb_002272_030--Hb_002830_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.22991 30.2554 17.26 24.5199 5.3221 6.2543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.0034 13.2184 19.451 12.5912 18.295

CAGE analysis