Hb_001404_110

Information

Type -
Description -
Location Contig1404: 102996-116020
Sequence    

Annotation

kegg
ID rcu:RCOM_0708920
description phosphoinositide 5-phosphatase, putative
nr
ID XP_002516207.1
description phosphoinositide 5-phosphatase, putative [Ricinus communis]
swissprot
ID Q7XZU2
description Phosphoinositide phosphatase SAC3 OS=Arabidopsis thaliana GN=SAC3 PE=2 SV=1
trembl
ID B9RR38
description Phosphoinositide 5-phosphatase, putative OS=Ricinus communis GN=RCOM_0708920 PE=4 SV=1
Gene Ontology
ID GO:0042578
description phosphoinositide phosphatase sac3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10949: 115557-115822
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001404_110 0.0 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
2 Hb_066920_030 0.0610192313 - - PREDICTED: adagio protein 1 [Jatropha curcas]
3 Hb_001723_100 0.067221122 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
4 Hb_002830_010 0.0684221538 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
5 Hb_000008_440 0.0754947479 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Jatropha curcas]
6 Hb_002272_030 0.0796797163 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
7 Hb_020178_040 0.0806747185 - - conserved hypothetical protein [Ricinus communis]
8 Hb_012632_010 0.0831433302 - - PREDICTED: uncharacterized protein LOC105640019 [Jatropha curcas]
9 Hb_032202_040 0.0904654131 - - PREDICTED: phospholipase D beta 2 [Jatropha curcas]
10 Hb_002042_050 0.0922213881 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
11 Hb_002542_110 0.0923034458 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
12 Hb_003607_130 0.0932541812 - - serine/threonine protein kinase, putative [Ricinus communis]
13 Hb_000181_340 0.0959306228 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
14 Hb_000096_140 0.096606013 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_062226_070 0.0968107135 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
16 Hb_000304_080 0.0980840311 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
17 Hb_000347_400 0.0981493686 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
18 Hb_002071_070 0.0982386716 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
19 Hb_004030_080 0.0992323122 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
20 Hb_001716_040 0.0995979499 - - ribonuclease p/mrp subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_001404_110 Hb_001404_110 Hb_066920_030 Hb_066920_030 Hb_001404_110--Hb_066920_030 Hb_001723_100 Hb_001723_100 Hb_001404_110--Hb_001723_100 Hb_002830_010 Hb_002830_010 Hb_001404_110--Hb_002830_010 Hb_000008_440 Hb_000008_440 Hb_001404_110--Hb_000008_440 Hb_002272_030 Hb_002272_030 Hb_001404_110--Hb_002272_030 Hb_020178_040 Hb_020178_040 Hb_001404_110--Hb_020178_040 Hb_066920_030--Hb_001723_100 Hb_005977_070 Hb_005977_070 Hb_066920_030--Hb_005977_070 Hb_004030_080 Hb_004030_080 Hb_066920_030--Hb_004030_080 Hb_066920_030--Hb_002830_010 Hb_000347_400 Hb_000347_400 Hb_066920_030--Hb_000347_400 Hb_001723_100--Hb_020178_040 Hb_001723_100--Hb_002272_030 Hb_002631_210 Hb_002631_210 Hb_001723_100--Hb_002631_210 Hb_001723_100--Hb_000347_400 Hb_005582_040 Hb_005582_040 Hb_002830_010--Hb_005582_040 Hb_002830_010--Hb_004030_080 Hb_002071_070 Hb_002071_070 Hb_002830_010--Hb_002071_070 Hb_010515_020 Hb_010515_020 Hb_002830_010--Hb_010515_020 Hb_010068_080 Hb_010068_080 Hb_002830_010--Hb_010068_080 Hb_001304_110 Hb_001304_110 Hb_002830_010--Hb_001304_110 Hb_032202_040 Hb_032202_040 Hb_000008_440--Hb_032202_040 Hb_003657_010 Hb_003657_010 Hb_000008_440--Hb_003657_010 Hb_002542_110 Hb_002542_110 Hb_000008_440--Hb_002542_110 Hb_000497_300 Hb_000497_300 Hb_000008_440--Hb_000497_300 Hb_000008_440--Hb_010068_080 Hb_002272_030--Hb_020178_040 Hb_002042_050 Hb_002042_050 Hb_002272_030--Hb_002042_050 Hb_000567_230 Hb_000567_230 Hb_002272_030--Hb_000567_230 Hb_002272_030--Hb_002830_010 Hb_009288_010 Hb_009288_010 Hb_002272_030--Hb_009288_010 Hb_020178_040--Hb_002042_050 Hb_020178_040--Hb_002071_070 Hb_000243_260 Hb_000243_260 Hb_020178_040--Hb_000243_260 Hb_020178_040--Hb_000347_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.95516 9.37277 6.70188 8.79935 4.66002 4.64656
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.942 5.00019 11.1909 6.15509 9.79017

CAGE analysis