Hb_032202_040

Information

Type -
Description -
Location Contig32202: 33825-40636
Sequence    

Annotation

kegg
ID rcu:RCOM_1613030
description phospholipase d beta, putative (EC:3.1.4.4)
nr
ID XP_012083503.1
description PREDICTED: phospholipase D beta 2 [Jatropha curcas]
swissprot
ID P93733
description Phospholipase D beta 1 OS=Arabidopsis thaliana GN=PLDBETA1 PE=2 SV=4
trembl
ID A0A067JXP4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14477 PE=4 SV=1
Gene Ontology
ID GO:0005634
description phospholipase d beta 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34065: 34990-37795
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032202_040 0.0 - - PREDICTED: phospholipase D beta 2 [Jatropha curcas]
2 Hb_000008_440 0.0698455347 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Jatropha curcas]
3 Hb_001226_140 0.0705528285 - - PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]
4 Hb_001818_100 0.0836428002 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
5 Hb_007533_040 0.0840380907 - - protein phosphatase 2c, putative [Ricinus communis]
6 Hb_000482_040 0.0848736365 - - Protein YME1, putative [Ricinus communis]
7 Hb_000027_260 0.0864978928 - - PREDICTED: chaperone protein dnaJ 15 [Jatropha curcas]
8 Hb_000913_020 0.0891337408 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
9 Hb_001404_110 0.0904654131 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
10 Hb_000094_070 0.0914606937 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X2 [Jatropha curcas]
11 Hb_004108_160 0.0920907828 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
12 Hb_000497_300 0.0933460727 - - peroxisomal membrane protein [Hevea brasiliensis]
13 Hb_008421_020 0.0936011414 - - PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]
14 Hb_010344_050 0.096658762 - - Adagio 1 -like protein [Gossypium arboreum]
15 Hb_000925_130 0.0967404501 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]
16 Hb_003125_170 0.0969457783 - - PREDICTED: uncharacterized protein LOC105648791 [Jatropha curcas]
17 Hb_000556_090 0.0975893242 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
18 Hb_001541_120 0.0989778717 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
19 Hb_009780_030 0.100404506 transcription factor TF Family: GRAS hypothetical protein POPTR_0005s14540g [Populus trichocarpa]
20 Hb_000948_150 0.1007312031 - - PREDICTED: heme-binding-like protein At3g10130, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_032202_040 Hb_032202_040 Hb_000008_440 Hb_000008_440 Hb_032202_040--Hb_000008_440 Hb_001226_140 Hb_001226_140 Hb_032202_040--Hb_001226_140 Hb_001818_100 Hb_001818_100 Hb_032202_040--Hb_001818_100 Hb_007533_040 Hb_007533_040 Hb_032202_040--Hb_007533_040 Hb_000482_040 Hb_000482_040 Hb_032202_040--Hb_000482_040 Hb_000027_260 Hb_000027_260 Hb_032202_040--Hb_000027_260 Hb_001404_110 Hb_001404_110 Hb_000008_440--Hb_001404_110 Hb_003657_010 Hb_003657_010 Hb_000008_440--Hb_003657_010 Hb_002542_110 Hb_002542_110 Hb_000008_440--Hb_002542_110 Hb_000497_300 Hb_000497_300 Hb_000008_440--Hb_000497_300 Hb_010068_080 Hb_010068_080 Hb_000008_440--Hb_010068_080 Hb_022092_030 Hb_022092_030 Hb_001226_140--Hb_022092_030 Hb_008421_020 Hb_008421_020 Hb_001226_140--Hb_008421_020 Hb_000504_180 Hb_000504_180 Hb_001226_140--Hb_000504_180 Hb_001226_140--Hb_001818_100 Hb_158530_020 Hb_158530_020 Hb_001226_140--Hb_158530_020 Hb_001629_030 Hb_001629_030 Hb_001818_100--Hb_001629_030 Hb_003025_100 Hb_003025_100 Hb_001818_100--Hb_003025_100 Hb_004052_170 Hb_004052_170 Hb_001818_100--Hb_004052_170 Hb_004108_160 Hb_004108_160 Hb_001818_100--Hb_004108_160 Hb_005601_040 Hb_005601_040 Hb_001818_100--Hb_005601_040 Hb_000768_200 Hb_000768_200 Hb_001818_100--Hb_000768_200 Hb_004583_010 Hb_004583_010 Hb_007533_040--Hb_004583_010 Hb_000140_090 Hb_000140_090 Hb_007533_040--Hb_000140_090 Hb_003913_130 Hb_003913_130 Hb_007533_040--Hb_003913_130 Hb_001357_200 Hb_001357_200 Hb_007533_040--Hb_001357_200 Hb_006740_030 Hb_006740_030 Hb_007533_040--Hb_006740_030 Hb_007533_040--Hb_005601_040 Hb_009778_060 Hb_009778_060 Hb_000482_040--Hb_009778_060 Hb_002686_090 Hb_002686_090 Hb_000482_040--Hb_002686_090 Hb_000635_060 Hb_000635_060 Hb_000482_040--Hb_000635_060 Hb_002078_340 Hb_002078_340 Hb_000482_040--Hb_002078_340 Hb_005116_050 Hb_005116_050 Hb_000482_040--Hb_005116_050 Hb_001163_060 Hb_001163_060 Hb_000482_040--Hb_001163_060 Hb_000096_140 Hb_000096_140 Hb_000027_260--Hb_000096_140 Hb_000454_090 Hb_000454_090 Hb_000027_260--Hb_000454_090 Hb_000027_260--Hb_007533_040 Hb_000027_260--Hb_005601_040 Hb_000027_260--Hb_004108_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.7462 8.80628 9.06704 12.1978 5.49082 6.15054
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.171 7.54824 16.1583 6.18226 16.302

CAGE analysis