Hb_003913_130

Information

Type -
Description -
Location Contig3913: 115007-119212
Sequence    

Annotation

kegg
ID rcu:RCOM_1509350
description histone deacetylase 1, 2, 3, putative
nr
ID XP_002511337.1
description histone deacetylase 1, 2 ,3, putative [Ricinus communis]
swissprot
ID Q9FML2
description Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1
trembl
ID B9RAW2
description Histone deacetylase OS=Ricinus communis GN=RCOM_1509350 PE=3 SV=1
Gene Ontology
ID GO:0032041
description histone deacetylase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39210: 115357-118248
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003913_130 0.0 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
2 Hb_001357_200 0.0612449012 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
3 Hb_000025_350 0.0681127516 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
4 Hb_007533_040 0.074192271 - - protein phosphatase 2c, putative [Ricinus communis]
5 Hb_000638_130 0.0787040828 - - PREDICTED: SAL1 phosphatase-like [Jatropha curcas]
6 Hb_000140_090 0.0799305143 - - PREDICTED: C-terminal binding protein AN [Jatropha curcas]
7 Hb_001014_060 0.0800867835 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
8 Hb_004429_020 0.0841561311 - - PREDICTED: magnesium transporter MRS2-5 [Jatropha curcas]
9 Hb_001124_130 0.0849628111 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
10 Hb_000080_130 0.0869678456 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
11 Hb_004218_010 0.0874814979 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
12 Hb_002042_050 0.0887548044 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
13 Hb_000120_640 0.0894813239 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_002272_030 0.0907958937 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
15 Hb_005653_070 0.0910132949 - - K+ transport growth defect-like protein [Hevea brasiliensis]
16 Hb_006740_030 0.0917491387 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
17 Hb_001014_070 0.0918136971 - - PREDICTED: uncharacterized protein LOC105647305 [Jatropha curcas]
18 Hb_038574_010 0.0922830271 - - PREDICTED: vacuolar cation/proton exchanger 3-like isoform X2 [Populus euphratica]
19 Hb_000069_640 0.0938250641 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
20 Hb_000567_230 0.093957372 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]

Gene co-expression network

sample Hb_003913_130 Hb_003913_130 Hb_001357_200 Hb_001357_200 Hb_003913_130--Hb_001357_200 Hb_000025_350 Hb_000025_350 Hb_003913_130--Hb_000025_350 Hb_007533_040 Hb_007533_040 Hb_003913_130--Hb_007533_040 Hb_000638_130 Hb_000638_130 Hb_003913_130--Hb_000638_130 Hb_000140_090 Hb_000140_090 Hb_003913_130--Hb_000140_090 Hb_001014_060 Hb_001014_060 Hb_003913_130--Hb_001014_060 Hb_001357_200--Hb_000025_350 Hb_001357_200--Hb_001014_060 Hb_001014_070 Hb_001014_070 Hb_001357_200--Hb_001014_070 Hb_000304_080 Hb_000304_080 Hb_001357_200--Hb_000304_080 Hb_001357_200--Hb_007533_040 Hb_000025_350--Hb_001014_060 Hb_000025_350--Hb_001014_070 Hb_000025_350--Hb_000304_080 Hb_002042_050 Hb_002042_050 Hb_000025_350--Hb_002042_050 Hb_004583_010 Hb_004583_010 Hb_007533_040--Hb_004583_010 Hb_007533_040--Hb_000140_090 Hb_006740_030 Hb_006740_030 Hb_007533_040--Hb_006740_030 Hb_005601_040 Hb_005601_040 Hb_007533_040--Hb_005601_040 Hb_000638_130--Hb_000025_350 Hb_000638_130--Hb_001014_060 Hb_005686_130 Hb_005686_130 Hb_000638_130--Hb_005686_130 Hb_000510_170 Hb_000510_170 Hb_000638_130--Hb_000510_170 Hb_065968_010 Hb_065968_010 Hb_000638_130--Hb_065968_010 Hb_000140_090--Hb_006740_030 Hb_000928_070 Hb_000928_070 Hb_000140_090--Hb_000928_070 Hb_001541_120 Hb_001541_120 Hb_000140_090--Hb_001541_120 Hb_005016_040 Hb_005016_040 Hb_000140_090--Hb_005016_040 Hb_010578_080 Hb_010578_080 Hb_000140_090--Hb_010578_080 Hb_001014_060--Hb_001014_070 Hb_000120_640 Hb_000120_640 Hb_001014_060--Hb_000120_640
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.6954 8.375 13.396 12.3057 3.43294 5.91056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.63874 9.59803 12.2761 8.6618 13.0922

CAGE analysis