Hb_001014_060

Information

Type transcription factor
Description TF Family: SET
Location Contig1014: 55834-60070
Sequence    

Annotation

kegg
ID rcu:RCOM_1438240
description histone-lysine n-methyltransferase, suvh, putative (EC:2.1.1.43)
nr
ID XP_002512666.1
description histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
swissprot
ID Q8GZB6
description Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 OS=Arabidopsis thaliana GN=SUVH4 PE=1 SV=2
trembl
ID B9RFZ7
description Histone-lysine N-methyltransferase OS=Ricinus communis GN=RCOM_1438240 PE=4 SV=1
Gene Ontology
ID GO:0005634
description histone-lysine n- h3 lysine-9 specific suvh4-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00695: 55760-57529
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001014_060 0.0 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
2 Hb_000025_350 0.0392115559 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
3 Hb_001014_070 0.0399524563 - - PREDICTED: uncharacterized protein LOC105647305 [Jatropha curcas]
4 Hb_001357_200 0.0529343038 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
5 Hb_000638_130 0.0745207058 - - PREDICTED: SAL1 phosphatase-like [Jatropha curcas]
6 Hb_003913_130 0.0800867835 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
7 Hb_000120_640 0.0864946178 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_000260_460 0.0879757041 - - Ethanolamine-phosphate cytidylyltransferase, putative [Ricinus communis]
9 Hb_000304_080 0.0898570143 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
10 Hb_000363_290 0.0907380435 - - fimbrin, putative [Ricinus communis]
11 Hb_001269_620 0.0922059955 - - PREDICTED: magnesium transporter MRS2-1 isoform X1 [Populus euphratica]
12 Hb_001124_130 0.0958776022 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
13 Hb_000167_110 0.0960775347 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
14 Hb_002042_050 0.0989397994 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
15 Hb_011671_260 0.0996405166 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
16 Hb_074197_040 0.1008430383 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
17 Hb_000703_190 0.1012130528 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
18 Hb_000567_230 0.1025869479 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
19 Hb_171215_010 0.1029109919 - - vesicle-associated membrane protein, putative [Ricinus communis]
20 Hb_000788_030 0.1035932502 - - PREDICTED: dynamin-2A [Jatropha curcas]

Gene co-expression network

sample Hb_001014_060 Hb_001014_060 Hb_000025_350 Hb_000025_350 Hb_001014_060--Hb_000025_350 Hb_001014_070 Hb_001014_070 Hb_001014_060--Hb_001014_070 Hb_001357_200 Hb_001357_200 Hb_001014_060--Hb_001357_200 Hb_000638_130 Hb_000638_130 Hb_001014_060--Hb_000638_130 Hb_003913_130 Hb_003913_130 Hb_001014_060--Hb_003913_130 Hb_000120_640 Hb_000120_640 Hb_001014_060--Hb_000120_640 Hb_000025_350--Hb_001357_200 Hb_000025_350--Hb_001014_070 Hb_000025_350--Hb_003913_130 Hb_000304_080 Hb_000304_080 Hb_000025_350--Hb_000304_080 Hb_002042_050 Hb_002042_050 Hb_000025_350--Hb_002042_050 Hb_001014_070--Hb_001357_200 Hb_000363_290 Hb_000363_290 Hb_001014_070--Hb_000363_290 Hb_000046_540 Hb_000046_540 Hb_001014_070--Hb_000046_540 Hb_074197_040 Hb_074197_040 Hb_001014_070--Hb_074197_040 Hb_001357_200--Hb_003913_130 Hb_001357_200--Hb_000304_080 Hb_007533_040 Hb_007533_040 Hb_001357_200--Hb_007533_040 Hb_000638_130--Hb_000025_350 Hb_005686_130 Hb_005686_130 Hb_000638_130--Hb_005686_130 Hb_000510_170 Hb_000510_170 Hb_000638_130--Hb_000510_170 Hb_000638_130--Hb_003913_130 Hb_065968_010 Hb_065968_010 Hb_000638_130--Hb_065968_010 Hb_003913_130--Hb_007533_040 Hb_000140_090 Hb_000140_090 Hb_003913_130--Hb_000140_090 Hb_000120_640--Hb_001357_200 Hb_000120_640--Hb_003913_130 Hb_000120_640--Hb_000025_350 Hb_000120_640--Hb_007533_040 Hb_007810_010 Hb_007810_010 Hb_000120_640--Hb_007810_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.67807 3.39619 6.86974 4.93954 2.04185 1.46062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.27616 3.01254 5.27725 3.85231 6.39567

CAGE analysis