Hb_000510_170

Information

Type -
Description -
Location Contig510: 162414-170784
Sequence    

Annotation

kegg
ID rcu:RCOM_0992220
description Glycosyltransferase QUASIMODO1, putative
nr
ID XP_002520989.1
description Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
swissprot
ID Q9M9Y5
description Probable galacturonosyltransferase 6 OS=Arabidopsis thaliana GN=GAUT6 PE=2 SV=1
trembl
ID B9S4T2
description Hexosyltransferase OS=Ricinus communis GN=RCOM_0992220 PE=3 SV=1
Gene Ontology
ID GO:0000139
description probable galacturonosyltransferase 6 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46286: 164044-164325 , PASA_asmbl_46287: 164910-165300 , PASA_asmbl_46288: 166753-170680 , PASA_asmbl_46289: 168191-168555
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000510_170 0.0 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
2 Hb_116349_120 0.058888892 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_000638_130 0.0755243119 - - PREDICTED: SAL1 phosphatase-like [Jatropha curcas]
4 Hb_001141_240 0.0824309954 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
5 Hb_000979_130 0.0849505549 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
6 Hb_000666_010 0.085790361 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002445_030 0.0859300167 - - hypothetical protein JCGZ_12656 [Jatropha curcas]
8 Hb_000088_260 0.0866401621 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
9 Hb_005686_130 0.0884478001 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase isopentenyl pyrophosphate isomerase [Hevea brasiliensis]
10 Hb_000007_090 0.0886911478 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
11 Hb_007416_070 0.0888672844 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
12 Hb_001117_110 0.0893622395 - - PREDICTED: dynamin-2A [Jatropha curcas]
13 Hb_004994_180 0.091327214 - - malic enzyme, putative [Ricinus communis]
14 Hb_000375_300 0.0929439546 - - PREDICTED: cyanate hydratase [Jatropha curcas]
15 Hb_000367_180 0.0954622961 - - Heparanase-2, putative [Ricinus communis]
16 Hb_002193_060 0.0955729176 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
17 Hb_007416_110 0.0958760026 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
18 Hb_005694_060 0.0975793046 - - PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase [Jatropha curcas]
19 Hb_030736_040 0.0994919461 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
20 Hb_010672_020 0.1006609169 - - PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000510_170 Hb_000510_170 Hb_116349_120 Hb_116349_120 Hb_000510_170--Hb_116349_120 Hb_000638_130 Hb_000638_130 Hb_000510_170--Hb_000638_130 Hb_001141_240 Hb_001141_240 Hb_000510_170--Hb_001141_240 Hb_000979_130 Hb_000979_130 Hb_000510_170--Hb_000979_130 Hb_000666_010 Hb_000666_010 Hb_000510_170--Hb_000666_010 Hb_002445_030 Hb_002445_030 Hb_000510_170--Hb_002445_030 Hb_001117_110 Hb_001117_110 Hb_116349_120--Hb_001117_110 Hb_013726_050 Hb_013726_050 Hb_116349_120--Hb_013726_050 Hb_005694_060 Hb_005694_060 Hb_116349_120--Hb_005694_060 Hb_000570_020 Hb_000570_020 Hb_116349_120--Hb_000570_020 Hb_000375_300 Hb_000375_300 Hb_116349_120--Hb_000375_300 Hb_000025_350 Hb_000025_350 Hb_000638_130--Hb_000025_350 Hb_001014_060 Hb_001014_060 Hb_000638_130--Hb_001014_060 Hb_005686_130 Hb_005686_130 Hb_000638_130--Hb_005686_130 Hb_003913_130 Hb_003913_130 Hb_000638_130--Hb_003913_130 Hb_065968_010 Hb_065968_010 Hb_000638_130--Hb_065968_010 Hb_006100_020 Hb_006100_020 Hb_001141_240--Hb_006100_020 Hb_000815_300 Hb_000815_300 Hb_001141_240--Hb_000815_300 Hb_006210_010 Hb_006210_010 Hb_001141_240--Hb_006210_010 Hb_000139_080 Hb_000139_080 Hb_001141_240--Hb_000139_080 Hb_001811_170 Hb_001811_170 Hb_001141_240--Hb_001811_170 Hb_006970_020 Hb_006970_020 Hb_001141_240--Hb_006970_020 Hb_000979_130--Hb_005694_060 Hb_000260_510 Hb_000260_510 Hb_000979_130--Hb_000260_510 Hb_000367_180 Hb_000367_180 Hb_000979_130--Hb_000367_180 Hb_015884_020 Hb_015884_020 Hb_000979_130--Hb_015884_020 Hb_019654_020 Hb_019654_020 Hb_000979_130--Hb_019654_020 Hb_000395_110 Hb_000395_110 Hb_000979_130--Hb_000395_110 Hb_000535_050 Hb_000535_050 Hb_000666_010--Hb_000535_050 Hb_001956_060 Hb_001956_060 Hb_000666_010--Hb_001956_060 Hb_007904_300 Hb_007904_300 Hb_000666_010--Hb_007904_300 Hb_000666_010--Hb_001811_170 Hb_000012_240 Hb_000012_240 Hb_000666_010--Hb_000012_240 Hb_000173_130 Hb_000173_130 Hb_002445_030--Hb_000173_130 Hb_006438_020 Hb_006438_020 Hb_002445_030--Hb_006438_020 Hb_002445_030--Hb_013726_050 Hb_008289_040 Hb_008289_040 Hb_002445_030--Hb_008289_040 Hb_002552_040 Hb_002552_040 Hb_002445_030--Hb_002552_040 Hb_002687_180 Hb_002687_180 Hb_002445_030--Hb_002687_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.74102 5.27955 8.71182 10.1701 1.71906 1.61502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.4685 3.36865 4.36031 6.78077 9.22545

CAGE analysis