Hb_000367_180

Information

Type -
Description -
Location Contig367: 156320-161918
Sequence    

Annotation

kegg
ID rcu:RCOM_1470540
description Heparanase-2, putative
nr
ID XP_002514696.1
description Heparanase-2, putative [Ricinus communis]
swissprot
ID Q9FF10
description Heparanase-like protein 1 OS=Arabidopsis thaliana GN=At5g07830 PE=2 SV=1
trembl
ID B9RLS7
description Heparanase-2, putative OS=Ricinus communis GN=RCOM_1470540 PE=4 SV=1
Gene Ontology
ID GO:0016020
description heparanase-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37745: 156327-161753 , PASA_asmbl_37746: 156327-161636 , PASA_asmbl_37747: 160926-161607 , PASA_asmbl_37748: 159167-159369
cDNA
(Sanger)
(ID:Location)		 032_G24.ab1: 160190-161753

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000367_180 0.0 - - Heparanase-2, putative [Ricinus communis]
2 Hb_019654_020 0.0525095487 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
3 Hb_000007_060 0.0641182508 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 1-like isoform X1 [Jatropha curcas]
4 Hb_000979_130 0.0675458558 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
5 Hb_065968_010 0.0758111625 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]
6 Hb_015884_020 0.0760371771 - - PREDICTED: protein PIR [Jatropha curcas]
7 Hb_000260_510 0.0780548651 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
8 Hb_007416_070 0.0821841544 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
9 Hb_074197_040 0.0834685918 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
10 Hb_002687_200 0.0884544056 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003605_020 0.0888351714 - - exocyst complex component sec6, putative [Ricinus communis]
12 Hb_001957_010 0.091056759 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g14410 isoform X1 [Jatropha curcas]
13 Hb_000197_190 0.091391641 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
14 Hb_000815_300 0.0924987131 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
15 Hb_002552_040 0.0929413906 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
16 Hb_003159_050 0.0929632657 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_000585_110 0.0934409853 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
18 Hb_000389_030 0.0934989433 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
19 Hb_106890_010 0.0936664037 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
20 Hb_000395_110 0.0943317468 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]

Gene co-expression network

sample Hb_000367_180 Hb_000367_180 Hb_019654_020 Hb_019654_020 Hb_000367_180--Hb_019654_020 Hb_000007_060 Hb_000007_060 Hb_000367_180--Hb_000007_060 Hb_000979_130 Hb_000979_130 Hb_000367_180--Hb_000979_130 Hb_065968_010 Hb_065968_010 Hb_000367_180--Hb_065968_010 Hb_015884_020 Hb_015884_020 Hb_000367_180--Hb_015884_020 Hb_000260_510 Hb_000260_510 Hb_000367_180--Hb_000260_510 Hb_019654_020--Hb_000007_060 Hb_019654_020--Hb_015884_020 Hb_019654_020--Hb_000979_130 Hb_000585_110 Hb_000585_110 Hb_019654_020--Hb_000585_110 Hb_003058_100 Hb_003058_100 Hb_019654_020--Hb_003058_100 Hb_000007_060--Hb_015884_020 Hb_000007_060--Hb_000260_510 Hb_106890_010 Hb_106890_010 Hb_000007_060--Hb_106890_010 Hb_000007_060--Hb_000979_130 Hb_005694_060 Hb_005694_060 Hb_000979_130--Hb_005694_060 Hb_000979_130--Hb_000260_510 Hb_000979_130--Hb_015884_020 Hb_000395_110 Hb_000395_110 Hb_000979_130--Hb_000395_110 Hb_002686_200 Hb_002686_200 Hb_065968_010--Hb_002686_200 Hb_003605_020 Hb_003605_020 Hb_065968_010--Hb_003605_020 Hb_159809_070 Hb_159809_070 Hb_065968_010--Hb_159809_070 Hb_002552_040 Hb_002552_040 Hb_065968_010--Hb_002552_040 Hb_074197_040 Hb_074197_040 Hb_065968_010--Hb_074197_040 Hb_001957_010 Hb_001957_010 Hb_065968_010--Hb_001957_010 Hb_015884_020--Hb_005694_060 Hb_001117_110 Hb_001117_110 Hb_015884_020--Hb_001117_110 Hb_006970_020 Hb_006970_020 Hb_015884_020--Hb_006970_020 Hb_002687_200 Hb_002687_200 Hb_015884_020--Hb_002687_200 Hb_000260_510--Hb_000395_110 Hb_010672_020 Hb_010672_020 Hb_000260_510--Hb_010672_020 Hb_001507_120 Hb_001507_120 Hb_000260_510--Hb_001507_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.30472 10.6604 26.6927 38.6152 10.9977 7.68317
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1804 9.64455 12.9446 25.9034 31.9593

CAGE analysis