Hb_001507_120

Information

Type -
Description -
Location Contig1507: 87423-97050
Sequence    

Annotation

kegg
ID rcu:RCOM_0785850
description transcription factor, putative
nr
ID XP_002523243.1
description transcription factor, putative [Ricinus communis]
swissprot
ID O48791
description Stomatal closure-related actin-binding protein 1 OS=Arabidopsis thaliana GN=SCAB1 PE=1 SV=1
trembl
ID B9SB74
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0785850 PE=4 SV=1
Gene Ontology
ID GO:0003779
description stomatal closure-related actin-binding protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12708: 87423-97716 , PASA_asmbl_12709: 97787-97992
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001507_120 0.0 - - transcription factor, putative [Ricinus communis]
2 Hb_001633_200 0.0713168247 - - hypothetical protein B456_005G137400 [Gossypium raimondii]
3 Hb_001957_010 0.0796758248 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g14410 isoform X1 [Jatropha curcas]
4 Hb_065968_010 0.0796895783 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]
5 Hb_000395_280 0.0831798047 - - PREDICTED: thioredoxin-related transmembrane protein 2 [Vitis vinifera]
6 Hb_003777_200 0.085437425 - - PREDICTED: uncharacterized protein LOC105640933 [Jatropha curcas]
7 Hb_000260_510 0.0911374036 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
8 Hb_074197_040 0.0929387135 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
9 Hb_000197_020 0.0947015699 - - PREDICTED: protein RER1A [Jatropha curcas]
10 Hb_000979_130 0.0949023885 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
11 Hb_000705_230 0.0971894926 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
12 Hb_007416_210 0.0972008248 - - PREDICTED: coatomer subunit beta-1 [Jatropha curcas]
13 Hb_000300_600 0.0975914496 - - tubulin alpha chain, putative [Ricinus communis]
14 Hb_003605_020 0.0993067714 - - exocyst complex component sec6, putative [Ricinus communis]
15 Hb_005218_020 0.1003063065 - - Uncharacterized protein isoform 3 [Theobroma cacao]
16 Hb_000066_030 0.1010179023 - - PREDICTED: uncharacterized protein LOC105643898 isoform X2 [Jatropha curcas]
17 Hb_001195_400 0.1014187086 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
18 Hb_002686_200 0.1016466302 - - glucosidase II beta subunit, putative [Ricinus communis]
19 Hb_003998_040 0.1020087973 - - organic anion transporter, putative [Ricinus communis]
20 Hb_010672_020 0.1020188647 - - PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_001507_120 Hb_001507_120 Hb_001633_200 Hb_001633_200 Hb_001507_120--Hb_001633_200 Hb_001957_010 Hb_001957_010 Hb_001507_120--Hb_001957_010 Hb_065968_010 Hb_065968_010 Hb_001507_120--Hb_065968_010 Hb_000395_280 Hb_000395_280 Hb_001507_120--Hb_000395_280 Hb_003777_200 Hb_003777_200 Hb_001507_120--Hb_003777_200 Hb_000260_510 Hb_000260_510 Hb_001507_120--Hb_000260_510 Hb_000705_230 Hb_000705_230 Hb_001633_200--Hb_000705_230 Hb_001633_200--Hb_000395_280 Hb_000197_020 Hb_000197_020 Hb_001633_200--Hb_000197_020 Hb_010672_020 Hb_010672_020 Hb_001633_200--Hb_010672_020 Hb_001633_200--Hb_003777_200 Hb_001957_010--Hb_065968_010 Hb_003605_020 Hb_003605_020 Hb_001957_010--Hb_003605_020 Hb_000197_190 Hb_000197_190 Hb_001957_010--Hb_000197_190 Hb_001957_010--Hb_000395_280 Hb_003994_030 Hb_003994_030 Hb_001957_010--Hb_003994_030 Hb_002686_200 Hb_002686_200 Hb_065968_010--Hb_002686_200 Hb_065968_010--Hb_003605_020 Hb_159809_070 Hb_159809_070 Hb_065968_010--Hb_159809_070 Hb_002552_040 Hb_002552_040 Hb_065968_010--Hb_002552_040 Hb_074197_040 Hb_074197_040 Hb_065968_010--Hb_074197_040 Hb_000395_280--Hb_003605_020 Hb_005754_040 Hb_005754_040 Hb_000395_280--Hb_005754_040 Hb_000395_280--Hb_065968_010 Hb_000395_280--Hb_002552_040 Hb_001227_120 Hb_001227_120 Hb_000395_280--Hb_001227_120 Hb_000317_040 Hb_000317_040 Hb_003777_200--Hb_000317_040 Hb_000046_500 Hb_000046_500 Hb_003777_200--Hb_000046_500 Hb_000300_600 Hb_000300_600 Hb_003777_200--Hb_000300_600 Hb_011214_160 Hb_011214_160 Hb_003777_200--Hb_011214_160 Hb_001703_050 Hb_001703_050 Hb_003777_200--Hb_001703_050 Hb_000395_110 Hb_000395_110 Hb_000260_510--Hb_000395_110 Hb_000979_130 Hb_000979_130 Hb_000260_510--Hb_000979_130 Hb_000260_510--Hb_010672_020 Hb_000367_180 Hb_000367_180 Hb_000260_510--Hb_000367_180 Hb_000007_060 Hb_000007_060 Hb_000260_510--Hb_000007_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.6485 3.39276 11.7818 15.7827 4.0528 5.21556
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.13027 4.12876 9.81268 10.1229 12.1412

CAGE analysis