Hb_011214_160

Information

Type -
Description -
Location Contig11214: 135141-142048
Sequence    

Annotation

kegg
ID rcu:RCOM_1604100
description coatomer delta subunit, putative
nr
ID XP_012074712.1
description PREDICTED: coatomer subunit delta [Jatropha curcas]
swissprot
ID Q93Y22
description Coatomer subunit delta OS=Arabidopsis thaliana GN=At5g05010 PE=1 SV=2
trembl
ID A0A067KU07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10492 PE=4 SV=1
Gene Ontology
ID GO:0005829
description coatomer subunit delta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03664: 135150-141944 , PASA_asmbl_03665: 135314-141977
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011214_160 0.0 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
2 Hb_003998_040 0.0652029736 - - organic anion transporter, putative [Ricinus communis]
3 Hb_001703_050 0.0699721213 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
4 Hb_000371_090 0.0771254679 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like [Jatropha curcas]
5 Hb_001051_070 0.079644704 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
6 Hb_000197_020 0.079861614 - - PREDICTED: protein RER1A [Jatropha curcas]
7 Hb_000139_530 0.0800232414 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000389_030 0.0814375977 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
9 Hb_000101_080 0.0830663483 - - PREDICTED: protein CREG1 [Jatropha curcas]
10 Hb_007481_010 0.0842499518 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
11 Hb_003777_200 0.0842901859 - - PREDICTED: uncharacterized protein LOC105640933 [Jatropha curcas]
12 Hb_000352_300 0.085354882 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
13 Hb_001454_230 0.0857884096 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
14 Hb_030982_010 0.0861824214 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000066_030 0.0864571064 - - PREDICTED: uncharacterized protein LOC105643898 isoform X2 [Jatropha curcas]
16 Hb_000703_190 0.0869738402 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
17 Hb_000046_500 0.0870015039 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
18 Hb_001633_080 0.0903394552 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
19 Hb_000256_230 0.0914326506 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]
20 Hb_000477_100 0.0918242318 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]

Gene co-expression network

sample Hb_011214_160 Hb_011214_160 Hb_003998_040 Hb_003998_040 Hb_011214_160--Hb_003998_040 Hb_001703_050 Hb_001703_050 Hb_011214_160--Hb_001703_050 Hb_000371_090 Hb_000371_090 Hb_011214_160--Hb_000371_090 Hb_001051_070 Hb_001051_070 Hb_011214_160--Hb_001051_070 Hb_000197_020 Hb_000197_020 Hb_011214_160--Hb_000197_020 Hb_000139_530 Hb_000139_530 Hb_011214_160--Hb_000139_530 Hb_000066_030 Hb_000066_030 Hb_003998_040--Hb_000066_030 Hb_005218_020 Hb_005218_020 Hb_003998_040--Hb_005218_020 Hb_007765_040 Hb_007765_040 Hb_003998_040--Hb_007765_040 Hb_001633_080 Hb_001633_080 Hb_003998_040--Hb_001633_080 Hb_003998_040--Hb_000371_090 Hb_001269_600 Hb_001269_600 Hb_001703_050--Hb_001269_600 Hb_003994_220 Hb_003994_220 Hb_001703_050--Hb_003994_220 Hb_065500_020 Hb_065500_020 Hb_001703_050--Hb_065500_020 Hb_000352_300 Hb_000352_300 Hb_001703_050--Hb_000352_300 Hb_000184_070 Hb_000184_070 Hb_001703_050--Hb_000184_070 Hb_000371_090--Hb_000184_070 Hb_000261_210 Hb_000261_210 Hb_000371_090--Hb_000261_210 Hb_002351_030 Hb_002351_030 Hb_000371_090--Hb_002351_030 Hb_000371_090--Hb_000066_030 Hb_000477_100 Hb_000477_100 Hb_001051_070--Hb_000477_100 Hb_007286_020 Hb_007286_020 Hb_001051_070--Hb_007286_020 Hb_000023_300 Hb_000023_300 Hb_001051_070--Hb_000023_300 Hb_001051_070--Hb_003998_040 Hb_000679_100 Hb_000679_100 Hb_001051_070--Hb_000679_100 Hb_000197_020--Hb_000066_030 Hb_000197_020--Hb_003998_040 Hb_004055_120 Hb_004055_120 Hb_000197_020--Hb_004055_120 Hb_000705_230 Hb_000705_230 Hb_000197_020--Hb_000705_230 Hb_010407_140 Hb_010407_140 Hb_000197_020--Hb_010407_140 Hb_005797_010 Hb_005797_010 Hb_000139_530--Hb_005797_010 Hb_086639_080 Hb_086639_080 Hb_000139_530--Hb_086639_080 Hb_001087_030 Hb_001087_030 Hb_000139_530--Hb_001087_030 Hb_000009_400 Hb_000009_400 Hb_000139_530--Hb_000009_400 Hb_004102_170 Hb_004102_170 Hb_000139_530--Hb_004102_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.8194 23.3017 46.7284 78.1184 32.2326 24.5273
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.1024 21.3789 29.8793 38.74 34.4977

CAGE analysis