Hb_005218_020

Information

Type -
Description -
Location Contig5218: 2897-7399
Sequence    

Annotation

kegg
ID tcc:TCM_000855
description Uncharacterized protein isoform 1
nr
ID XP_007047621.1
description Uncharacterized protein isoform 3 [Theobroma cacao]
swissprot
ID Q9M2Y6
description Uncharacterized protein At3g49720 OS=Arabidopsis thaliana GN=At3g49720 PE=2 SV=1
trembl
ID A0A061DPA9
description Uncharacterized protein isoform 3 OS=Theobroma cacao GN=TCM_000855 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46825: 2900-7379 , PASA_asmbl_46826: 3446-3585
cDNA
(Sanger)
(ID:Location)		 053_D01.ab1: 2926-7089

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005218_020 0.0 - - Uncharacterized protein isoform 3 [Theobroma cacao]
2 Hb_000066_030 0.056813289 - - PREDICTED: uncharacterized protein LOC105643898 isoform X2 [Jatropha curcas]
3 Hb_003998_040 0.0612809012 - - organic anion transporter, putative [Ricinus communis]
4 Hb_007765_040 0.0741770969 - - Cytosolic enolase isoform 3 [Theobroma cacao]
5 Hb_000917_130 0.0812174163 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
6 Hb_003529_030 0.0905377175 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
7 Hb_004055_120 0.0905537092 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
8 Hb_002150_040 0.0930000416 - - PREDICTED: CMP-sialic acid transporter 1 isoform X3 [Jatropha curcas]
9 Hb_000197_020 0.0938094383 - - PREDICTED: protein RER1A [Jatropha curcas]
10 Hb_003052_180 0.0938931247 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
11 Hb_005701_120 0.0943189379 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
12 Hb_001957_010 0.0943258572 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g14410 isoform X1 [Jatropha curcas]
13 Hb_002928_090 0.095733655 - - PREDICTED: metallocarboxypeptidase A-like protein TRV_02598 [Jatropha curcas]
14 Hb_004046_030 0.0967547572 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
15 Hb_000390_050 0.0972294472 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
16 Hb_001842_010 0.0976963306 - - serine/threonine protein kinase, putative [Ricinus communis]
17 Hb_003097_140 0.0980315585 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
18 Hb_170138_010 0.0982437778 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003206_110 0.099936829 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
20 Hb_001507_120 0.1003063065 - - transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005218_020 Hb_005218_020 Hb_000066_030 Hb_000066_030 Hb_005218_020--Hb_000066_030 Hb_003998_040 Hb_003998_040 Hb_005218_020--Hb_003998_040 Hb_007765_040 Hb_007765_040 Hb_005218_020--Hb_007765_040 Hb_000917_130 Hb_000917_130 Hb_005218_020--Hb_000917_130 Hb_003529_030 Hb_003529_030 Hb_005218_020--Hb_003529_030 Hb_004055_120 Hb_004055_120 Hb_005218_020--Hb_004055_120 Hb_000066_030--Hb_003998_040 Hb_000197_020 Hb_000197_020 Hb_000066_030--Hb_000197_020 Hb_000066_030--Hb_007765_040 Hb_000371_090 Hb_000371_090 Hb_000066_030--Hb_000371_090 Hb_011214_160 Hb_011214_160 Hb_000066_030--Hb_011214_160 Hb_003998_040--Hb_011214_160 Hb_003998_040--Hb_007765_040 Hb_001633_080 Hb_001633_080 Hb_003998_040--Hb_001633_080 Hb_003998_040--Hb_000371_090 Hb_000390_050 Hb_000390_050 Hb_007765_040--Hb_000390_050 Hb_003097_140 Hb_003097_140 Hb_007765_040--Hb_003097_140 Hb_007416_210 Hb_007416_210 Hb_007765_040--Hb_007416_210 Hb_000917_130--Hb_004055_120 Hb_000917_130--Hb_003529_030 Hb_000917_130--Hb_003998_040 Hb_000256_150 Hb_000256_150 Hb_000917_130--Hb_000256_150 Hb_000477_100 Hb_000477_100 Hb_000917_130--Hb_000477_100 Hb_000258_240 Hb_000258_240 Hb_003529_030--Hb_000258_240 Hb_003529_030--Hb_000477_100 Hb_000060_050 Hb_000060_050 Hb_003529_030--Hb_000060_050 Hb_004129_140 Hb_004129_140 Hb_003529_030--Hb_004129_140 Hb_005504_050 Hb_005504_050 Hb_003529_030--Hb_005504_050 Hb_004055_120--Hb_000256_150 Hb_000787_160 Hb_000787_160 Hb_004055_120--Hb_000787_160 Hb_004055_120--Hb_000197_020 Hb_004055_120--Hb_003998_040 Hb_000300_270 Hb_000300_270 Hb_004055_120--Hb_000300_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.92637 6.40416 16.2801 39.2685 8.83638 17.7186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2991 10.0402 17.3045 19.6139 21.71

CAGE analysis